Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 AC016405.3-201ENST00000607710 860 ntBASIC19.44■□□□□ 0.7
BRF2Q9HAW0 AC100791.3-201ENST00000617619 330 ntBASIC19.44■□□□□ 0.7
BRF2Q9HAW0 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRF2Q9HAW0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 CNN2P6-201ENST00000439038 900 ntBASIC19.43■□□□□ 0.7
BRF2Q9HAW0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.43■□□□□ 0.7
BRF2Q9HAW0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.43■□□□□ 0.7
BRF2Q9HAW0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF2Q9HAW0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 AL162430.1-201ENST00000480705 870 ntBASIC19.42■□□□□ 0.7
BRF2Q9HAW0 RARRES2P4-201ENST00000514074 484 ntBASIC19.42■□□□□ 0.7
BRF2Q9HAW0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 AC011767.1-201ENST00000617410 1153 ntBASIC19.42■□□□□ 0.7
BRF2Q9HAW0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
BRF2Q9HAW0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 BID-214ENST00000617586 542 ntTSL 5 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 SMG8-203ENST00000578922 2178 ntBASIC19.41■□□□□ 0.7
BRF2Q9HAW0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BRF2Q9HAW0 AC068338.2-201ENST00000563278 1430 ntBASIC19.41■□□□□ 0.7
BRF2Q9HAW0 DPP3P2-201ENST00000416030 1696 ntBASIC19.4■□□□□ 0.7
BRF2Q9HAW0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
BRF2Q9HAW0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms