Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 AC073210.2-201ENST00000430369 194 ntBASIC18.8■□□□□ 0.6
UBQLN3Q9H347 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 AC010980.2-201ENST00000587099 1412 ntBASIC18.8■□□□□ 0.6
UBQLN3Q9H347 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UBQLN3Q9H347 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 AC007225.1-201ENST00000566331 1836 ntBASIC18.79■□□□□ 0.6
UBQLN3Q9H347 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 MIPEPP3-201ENST00000412105 444 ntBASIC18.79■□□□□ 0.6
UBQLN3Q9H347 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
UBQLN3Q9H347 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 AC027702.1-201ENST00000563810 1770 ntBASIC18.78■□□□□ 0.6
UBQLN3Q9H347 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.78■□□□□ 0.6
UBQLN3Q9H347 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 AC007322.3-201ENST00000426526 701 ntBASIC18.77■□□□□ 0.6
UBQLN3Q9H347 AC069152.1-201ENST00000438030 544 ntBASIC18.77■□□□□ 0.6
UBQLN3Q9H347 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 AC100791.3-201ENST00000617619 330 ntBASIC18.77■□□□□ 0.6
UBQLN3Q9H347 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBQLN3Q9H347 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
UBQLN3Q9H347 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
UBQLN3Q9H347 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
UBQLN3Q9H347 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.77■□□□□ 0.59
UBQLN3Q9H347 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 AC092118.2-201ENST00000613495 667 ntBASIC18.76■□□□□ 0.59
UBQLN3Q9H347 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBQLN3Q9H347 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms