Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 AC120498.10-201ENST00000621827 505 ntBASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM56Q9BRZ2 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM56Q9BRZ2 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM56Q9BRZ2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM56Q9BRZ2 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM56Q9BRZ2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 SMG8-203ENST00000578922 2178 ntBASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 AC116050.2-201ENST00000612102 1779 ntBASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM56Q9BRZ2 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 RBM17P2-201ENST00000616397 1405 ntBASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 AC091799.1-201ENST00000422823 811 ntBASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 AC087623.3-201ENST00000607047 1098 ntBASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM56Q9BRZ2 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 AC092720.2-201ENST00000602388 1665 ntBASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM56Q9BRZ2 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms