Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDCA3Q99618 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDCA3Q99618 AP002982.1-201ENST00000492365 877 ntBASIC21.3■■□□□ 1
CDCA3Q99618 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDCA3Q99618 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.3■■□□□ 1
CDCA3Q99618 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDCA3Q99618 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.29■■□□□ 1
CDCA3Q99618 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.29■■□□□ 1
CDCA3Q99618 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.29■■□□□ 1
CDCA3Q99618 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDCA3Q99618 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDCA3Q99618 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDCA3Q99618 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CDCA3Q99618 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.29■■□□□ 1
CDCA3Q99618 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CDCA3Q99618 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.29■■□□□ 1
CDCA3Q99618 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.29■■□□□ 1
CDCA3Q99618 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.29■■□□□ 1
CDCA3Q99618 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.29■■□□□ 1
CDCA3Q99618 AL031963.3-201ENST00000606441 850 ntBASIC21.29■■□□□ 1
CDCA3Q99618 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDCA3Q99618 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.28■■□□□ 1
CDCA3Q99618 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 AC079598.2-202ENST00000546624 1451 ntBASIC21.28■■□□□ 1
CDCA3Q99618 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.28■■□□□ 1
CDCA3Q99618 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CDCA3Q99618 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 AC005521.1-201ENST00000393351 872 ntBASIC21.28■■□□□ 1
CDCA3Q99618 AC113347.1-201ENST00000413321 391 ntBASIC21.28■■□□□ 1
CDCA3Q99618 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.28■■□□□ 1
CDCA3Q99618 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
CDCA3Q99618 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.28■■□□□ 1
CDCA3Q99618 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.28■■□□□ 1
CDCA3Q99618 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.28■■□□□ 1
CDCA3Q99618 REXO1L10P-201ENST00000615707 1290 ntBASIC21.28■■□□□ 1
CDCA3Q99618 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.28■■□□□ 1
CDCA3Q99618 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.28■■□□□ 1
CDCA3Q99618 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.28■■□□□ 1
CDCA3Q99618 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDCA3Q99618 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.27■■□□□ 1
CDCA3Q99618 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.27■■□□□ 1
CDCA3Q99618 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.27■■□□□ 1
CDCA3Q99618 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.27■■□□□ 1
CDCA3Q99618 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.27■■□□□ 1
CDCA3Q99618 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.27■■□□□ 1
CDCA3Q99618 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.27■■□□□ 1
CDCA3Q99618 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.27■■□□□ 1
CDCA3Q99618 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CDCA3Q99618 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CDCA3Q99618 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.26■□□□□ 0.99
CDCA3Q99618 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.26■□□□□ 0.99
CDCA3Q99618 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.26■□□□□ 0.99
CDCA3Q99618 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.26■□□□□ 0.99
CDCA3Q99618 AP000525.1-201ENST00000608286 694 ntBASIC21.26■□□□□ 0.99
CDCA3Q99618 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDCA3Q99618 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDCA3Q99618 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.26■□□□□ 0.99
CDCA3Q99618 LINC01568-207ENST00000641790 1380 ntBASIC21.25■□□□□ 0.99
CDCA3Q99618 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDCA3Q99618 AC011484.1-201ENST00000377652 1995 ntBASIC21.25■□□□□ 0.99
CDCA3Q99618 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.25■□□□□ 0.99
CDCA3Q99618 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDCA3Q99618 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDCA3Q99618 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CDCA3Q99618 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.25■□□□□ 0.99
CDCA3Q99618 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.25■□□□□ 0.99
CDCA3Q99618 NAPSB-206ENST00000562112 1266 ntBASIC21.25■□□□□ 0.99
CDCA3Q99618 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.25■□□□□ 0.99
CDCA3Q99618 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CDCA3Q99618 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDCA3Q99618 KRT18P22-201ENST00000402024 1347 ntBASIC21.25■□□□□ 0.99
CDCA3Q99618 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDCA3Q99618 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.24■□□□□ 0.99
CDCA3Q99618 MIR1238-201ENST00000408483 83 ntBASIC21.24■□□□□ 0.99
CDCA3Q99618 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.24■□□□□ 0.99
CDCA3Q99618 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.24■□□□□ 0.99
CDCA3Q99618 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.24■□□□□ 0.99
CDCA3Q99618 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CDCA3Q99618 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CDCA3Q99618 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.24■□□□□ 0.99
CDCA3Q99618 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.24■□□□□ 0.99
CDCA3Q99618 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.24■□□□□ 0.99
CDCA3Q99618 AC124283.5-201ENST00000624661 1809 ntBASIC21.24■□□□□ 0.99
CDCA3Q99618 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms