Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.38■□□□□ 0.69
VMP1Q96GC9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.38■□□□□ 0.69
VMP1Q96GC9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.38■□□□□ 0.69
VMP1Q96GC9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VMP1Q96GC9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 FEM1AP1-201ENST00000431297 1995 ntBASIC19.37■□□□□ 0.69
VMP1Q96GC9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 ID1-201ENST00000376105 1233 ntBASIC19.37■□□□□ 0.69
VMP1Q96GC9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.37■□□□□ 0.69
VMP1Q96GC9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VMP1Q96GC9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VMP1Q96GC9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 AC068338.2-201ENST00000563278 1430 ntBASIC19.36■□□□□ 0.69
VMP1Q96GC9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
VMP1Q96GC9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VMP1Q96GC9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 CYP2T1P-201ENST00000432607 1285 ntBASIC19.35■□□□□ 0.69
VMP1Q96GC9 NCF1B-203ENST00000435988 1254 ntBASIC19.35■□□□□ 0.69
VMP1Q96GC9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 AL591742.1-201ENST00000604433 565 ntBASIC19.35■□□□□ 0.69
VMP1Q96GC9 AL050303.2-201ENST00000619798 666 ntBASIC19.35■□□□□ 0.69
VMP1Q96GC9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VMP1Q96GC9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VMP1Q96GC9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 AL162412.1-201ENST00000567129 965 ntBASIC19.34■□□□□ 0.69
VMP1Q96GC9 AL121832.2-201ENST00000610979 668 ntBASIC19.34■□□□□ 0.69
VMP1Q96GC9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms