Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PALM-207ENST00000590161 2137 ntTSL 4 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SOX15-203ENST00000570788 1093 ntBASIC6.24□□□□□ -1.41
SYNE1Q8NF91 EFS-203ENST00000429593 2610 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 NME6-213ENST00000451657 871 ntTSL 2 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 AC120498.10-201ENST00000621827 505 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 AC092053.2-201ENST00000640557 1818 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 MIR1224-201ENST00000408193 85 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 RPS2P4-201ENST00000476944 856 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 TSPY15P-201ENST00000457163 923 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 ABHD17AP6-201ENST00000458502 1044 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 RPS2P55-201ENST00000397318 883 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 AP003097.1-201ENST00000530657 1135 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 AC233723.2-201ENST00000623798 2106 ntBASIC6.23□□□□□ -1.41
SYNE1Q8NF91 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SYNE1Q8NF91 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 RCN1P1-201ENST00000400413 996 ntBASIC6.22□□□□□ -1.41
SYNE1Q8NF91 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
SYNE1Q8NF91 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms