Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 FAM197Y1-201ENST00000421178 764 ntBASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 AL590326.2-201ENST00000625139 305 ntBASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SLC44A3Q8N4M1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 AL353807.1-201ENST00000427475 662 ntBASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SLC44A3Q8N4M1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
SLC44A3Q8N4M1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.89■□□□□ 0.94
SLC44A3Q8N4M1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 AC145285.6-201ENST00000604632 637 ntBASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 MIR6786-201ENST00000616843 113 ntBASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.89■□□□□ 0.93
SLC44A3Q8N4M1 NBPF21P-201ENST00000425093 1451 ntBASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 AC005363.2-201ENST00000618631 242 ntBASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SLC44A3Q8N4M1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 AC073195.1-201ENST00000607241 877 ntBASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.87■□□□□ 0.93
SLC44A3Q8N4M1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms