Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 CDV3P1-201ENST00000471403 739 ntBASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 AC100791.3-201ENST00000617619 330 ntBASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 AC073648.6-201ENST00000641589 218 ntBASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
CCDC144BQ3MJ40 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC144BQ3MJ40 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
CCDC144BQ3MJ40 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC144BQ3MJ40 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC144BQ3MJ40 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 AC008403.3-201ENST00000598924 454 ntBASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC144BQ3MJ40 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms