Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.88□□□□□ -0.03
PRKDCP78527 AC026271.3-201ENST00000571884 352 ntBASIC14.88□□□□□ -0.03
PRKDCP78527 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 KRT8P45-201ENST00000414328 1447 ntBASIC14.88□□□□□ -0.03
PRKDCP78527 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PRKDCP78527 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
PRKDCP78527 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
PRKDCP78527 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.88□□□□□ -0.03
PRKDCP78527 AC128688.1-201ENST00000487626 519 ntBASIC14.88□□□□□ -0.03
PRKDCP78527 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.88□□□□□ -0.03
PRKDCP78527 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
PRKDCP78527 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.87□□□□□ -0.03
PRKDCP78527 NIFKP9-201ENST00000419265 221 ntBASIC14.87□□□□□ -0.03
PRKDCP78527 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC14.87□□□□□ -0.03
PRKDCP78527 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC14.87□□□□□ -0.03
PRKDCP78527 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC14.87□□□□□ -0.03
PRKDCP78527 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
PRKDCP78527 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC14.87□□□□□ -0.03
PRKDCP78527 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.87□□□□□ -0.03
PRKDCP78527 RN7SL510P-201ENST00000581311 263 ntBASIC14.87□□□□□ -0.03
PRKDCP78527 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC14.87□□□□□ -0.03
PRKDCP78527 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC14.87□□□□□ -0.03
PRKDCP78527 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.87□□□□□ -0.03
PRKDCP78527 AL671277.2-201ENST00000458060 996 ntBASIC14.87□□□□□ -0.03
PRKDCP78527 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.87□□□□□ -0.03
PRKDCP78527 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PRKDCP78527 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PRKDCP78527 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PRKDCP78527 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PRKDCP78527 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC14.86□□□□□ -0.03
PRKDCP78527 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PRKDCP78527 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PRKDCP78527 RNF152P1-201ENST00000397754 604 ntBASIC14.86□□□□□ -0.03
PRKDCP78527 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.86□□□□□ -0.03
PRKDCP78527 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
PRKDCP78527 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PRKDCP78527 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PRKDCP78527 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.86□□□□□ -0.03
PRKDCP78527 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PRKDCP78527 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.86□□□□□ -0.03
PRKDCP78527 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.86□□□□□ -0.03
PRKDCP78527 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PRKDCP78527 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC14.85□□□□□ -0.03
PRKDCP78527 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PRKDCP78527 AC087742.1-201ENST00000575880 1738 ntBASIC14.85□□□□□ -0.03
PRKDCP78527 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC14.85□□□□□ -0.03
PRKDCP78527 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.85□□□□□ -0.03
PRKDCP78527 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.85□□□□□ -0.03
PRKDCP78527 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.85□□□□□ -0.03
PRKDCP78527 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.85□□□□□ -0.03
PRKDCP78527 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 AC026471.6-201ENST00000622954 1905 ntBASIC14.85□□□□□ -0.03
PRKDCP78527 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.85□□□□□ -0.03
PRKDCP78527 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.85□□□□□ -0.03
PRKDCP78527 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC14.85□□□□□ -0.03
PRKDCP78527 KRT17P6-201ENST00000453795 1220 ntBASIC14.85□□□□□ -0.03
PRKDCP78527 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC14.85□□□□□ -0.03
PRKDCP78527 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PRKDCP78527 IER3-202ENST00000376377 1350 ntBASIC14.84□□□□□ -0.03
PRKDCP78527 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.84□□□□□ -0.03
PRKDCP78527 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.84□□□□□ -0.03
PRKDCP78527 CR769767.2-201ENST00000622735 460 ntBASIC14.84□□□□□ -0.03
PRKDCP78527 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PRKDCP78527 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC14.84□□□□□ -0.03
PRKDCP78527 KRT16P1-201ENST00000399124 1418 ntBASIC14.84□□□□□ -0.03
PRKDCP78527 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms