Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
YBX1P67809 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.83■□□□□ 0.77
YBX1P67809 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
YBX1P67809 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.83■□□□□ 0.77
YBX1P67809 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.83■□□□□ 0.77
YBX1P67809 RARRES2P4-201ENST00000514074 484 ntBASIC19.83■□□□□ 0.77
YBX1P67809 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.83■□□□□ 0.77
YBX1P67809 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
YBX1P67809 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.83■□□□□ 0.76
YBX1P67809 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.83■□□□□ 0.76
YBX1P67809 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
YBX1P67809 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
YBX1P67809 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
YBX1P67809 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
YBX1P67809 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.82■□□□□ 0.76
YBX1P67809 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
YBX1P67809 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
YBX1P67809 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
YBX1P67809 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
YBX1P67809 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
YBX1P67809 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.82■□□□□ 0.76
YBX1P67809 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.82■□□□□ 0.76
YBX1P67809 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
YBX1P67809 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.82■□□□□ 0.76
YBX1P67809 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
YBX1P67809 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.82■□□□□ 0.76
YBX1P67809 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
YBX1P67809 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
YBX1P67809 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.81■□□□□ 0.76
YBX1P67809 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.81■□□□□ 0.76
YBX1P67809 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.81■□□□□ 0.76
YBX1P67809 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
YBX1P67809 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 NCF1B-203ENST00000435988 1254 ntBASIC19.81■□□□□ 0.76
YBX1P67809 CDV3P1-201ENST00000471403 739 ntBASIC19.81■□□□□ 0.76
YBX1P67809 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.81■□□□□ 0.76
YBX1P67809 AC083906.2-201ENST00000511578 360 ntBASIC19.81■□□□□ 0.76
YBX1P67809 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.81■□□□□ 0.76
YBX1P67809 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
YBX1P67809 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
YBX1P67809 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.8■□□□□ 0.76
YBX1P67809 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 AL355472.2-201ENST00000422958 438 ntBASIC19.8■□□□□ 0.76
YBX1P67809 GUSBP6-202ENST00000438529 1198 ntBASIC19.8■□□□□ 0.76
YBX1P67809 AL162412.1-201ENST00000567129 965 ntBASIC19.8■□□□□ 0.76
YBX1P67809 FAM21FP-204ENST00000608637 956 ntBASIC19.8■□□□□ 0.76
YBX1P67809 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.8■□□□□ 0.76
YBX1P67809 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
YBX1P67809 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
YBX1P67809 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
YBX1P67809 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
YBX1P67809 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
YBX1P67809 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
YBX1P67809 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
YBX1P67809 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.79■□□□□ 0.76
YBX1P67809 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.79■□□□□ 0.76
YBX1P67809 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
YBX1P67809 AC105036.2-201ENST00000569468 176 ntBASIC19.79■□□□□ 0.76
YBX1P67809 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
YBX1P67809 AC133552.2-202ENST00000575694 574 ntBASIC19.79■□□□□ 0.76
YBX1P67809 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
YBX1P67809 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.79■□□□□ 0.76
YBX1P67809 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 AF201337.1-201ENST00000520239 748 ntBASIC19.78■□□□□ 0.76
YBX1P67809 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.78■□□□□ 0.76
YBX1P67809 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.78■□□□□ 0.76
YBX1P67809 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
YBX1P67809 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 AL512408.1-201ENST00000569378 2000 ntBASIC19.78■□□□□ 0.76
YBX1P67809 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.78■□□□□ 0.76
YBX1P67809 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
YBX1P67809 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms