Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.91■□□□□ 0.94
NEK3P51956 RARRES2P4-201ENST00000514074 484 ntBASIC20.91■□□□□ 0.94
NEK3P51956 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NEK3P51956 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.91■□□□□ 0.94
NEK3P51956 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NEK3P51956 AC007952.6-201ENST00000573168 2673 ntBASIC20.91■□□□□ 0.94
NEK3P51956 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.91■□□□□ 0.94
NEK3P51956 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.91■□□□□ 0.94
NEK3P51956 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.91■□□□□ 0.94
NEK3P51956 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.91■□□□□ 0.94
NEK3P51956 AC003957.1-201ENST00000625108 2673 ntBASIC20.91■□□□□ 0.94
NEK3P51956 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.91■□□□□ 0.94
NEK3P51956 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NEK3P51956 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
NEK3P51956 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.9■□□□□ 0.94
NEK3P51956 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.9■□□□□ 0.94
NEK3P51956 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.9■□□□□ 0.94
NEK3P51956 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
NEK3P51956 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.9■□□□□ 0.94
NEK3P51956 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NEK3P51956 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
NEK3P51956 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
NEK3P51956 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
NEK3P51956 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NEK3P51956 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
NEK3P51956 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NEK3P51956 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.89■□□□□ 0.93
NEK3P51956 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 CDV3P1-201ENST00000471403 739 ntBASIC20.89■□□□□ 0.93
NEK3P51956 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.89■□□□□ 0.93
NEK3P51956 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.89■□□□□ 0.93
NEK3P51956 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.89■□□□□ 0.93
NEK3P51956 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
NEK3P51956 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
NEK3P51956 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
NEK3P51956 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
NEK3P51956 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NEK3P51956 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
NEK3P51956 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.88■□□□□ 0.93
NEK3P51956 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
NEK3P51956 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
NEK3P51956 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEK3P51956 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NEK3P51956 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.88■□□□□ 0.93
NEK3P51956 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NEK3P51956 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
NEK3P51956 AC069152.1-201ENST00000438030 544 ntBASIC20.88■□□□□ 0.93
NEK3P51956 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.88■□□□□ 0.93
NEK3P51956 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.88■□□□□ 0.93
NEK3P51956 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.88■□□□□ 0.93
NEK3P51956 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.88■□□□□ 0.93
NEK3P51956 AC133041.1-202ENST00000642053 222 ntBASIC20.88■□□□□ 0.93
NEK3P51956 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEK3P51956 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.88■□□□□ 0.93
NEK3P51956 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.88■□□□□ 0.93
NEK3P51956 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEK3P51956 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NEK3P51956 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NEK3P51956 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 MIPEPP3-201ENST00000412105 444 ntBASIC20.87■□□□□ 0.93
NEK3P51956 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.87■□□□□ 0.93
NEK3P51956 MIR4758-201ENST00000577688 71 ntBASIC20.87■□□□□ 0.93
NEK3P51956 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
NEK3P51956 FAM21FP-204ENST00000608637 956 ntBASIC20.87■□□□□ 0.93
NEK3P51956 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.87■□□□□ 0.93
NEK3P51956 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.87■□□□□ 0.93
NEK3P51956 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
NEK3P51956 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NEK3P51956 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
NEK3P51956 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NEK3P51956 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NEK3P51956 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms