Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.48■□□□□ 0.23
CDX1P47902 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.48■□□□□ 0.23
CDX1P47902 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDX1P47902 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
CDX1P47902 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDX1P47902 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.48■□□□□ 0.23
CDX1P47902 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CDX1P47902 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.47■□□□□ 0.23
CDX1P47902 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CDX1P47902 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.47■□□□□ 0.23
CDX1P47902 AC010141.2-201ENST00000452426 721 ntBASIC16.47■□□□□ 0.23
CDX1P47902 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.47■□□□□ 0.23
CDX1P47902 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.47■□□□□ 0.23
CDX1P47902 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.47■□□□□ 0.23
CDX1P47902 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CDX1P47902 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CDX1P47902 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDX1P47902 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.47■□□□□ 0.23
CDX1P47902 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.46■□□□□ 0.23
CDX1P47902 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC16.46■□□□□ 0.23
CDX1P47902 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CDX1P47902 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.46■□□□□ 0.23
CDX1P47902 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDX1P47902 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CDX1P47902 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CDX1P47902 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CDX1P47902 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDX1P47902 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.46■□□□□ 0.22
CDX1P47902 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC16.46■□□□□ 0.22
CDX1P47902 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDX1P47902 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDX1P47902 AC005082.1-201ENST00000413042 2259 ntBASIC16.45■□□□□ 0.22
CDX1P47902 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CDX1P47902 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CDX1P47902 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.45■□□□□ 0.22
CDX1P47902 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.45■□□□□ 0.22
CDX1P47902 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 AC011767.1-201ENST00000617410 1153 ntBASIC16.45■□□□□ 0.22
CDX1P47902 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX1P47902 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
CDX1P47902 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX1P47902 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CDX1P47902 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.45■□□□□ 0.22
CDX1P47902 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.45■□□□□ 0.22
CDX1P47902 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDX1P47902 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDX1P47902 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms