Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.87■□□□□ 0.77
SHMT2P34897 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.87■□□□□ 0.77
SHMT2P34897 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHMT2P34897 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHMT2P34897 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHMT2P34897 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHMT2P34897 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.87■□□□□ 0.77
SHMT2P34897 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SHMT2P34897 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.86■□□□□ 0.77
SHMT2P34897 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SHMT2P34897 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.86■□□□□ 0.77
SHMT2P34897 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.86■□□□□ 0.77
SHMT2P34897 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.86■□□□□ 0.77
SHMT2P34897 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.86■□□□□ 0.77
SHMT2P34897 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 AL138781.1-201ENST00000566567 1274 ntBASIC19.86■□□□□ 0.77
SHMT2P34897 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
SHMT2P34897 AC092118.2-201ENST00000613495 667 ntBASIC19.86■□□□□ 0.77
SHMT2P34897 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.86■□□□□ 0.77
SHMT2P34897 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 AC007952.6-201ENST00000573168 2673 ntBASIC19.86■□□□□ 0.77
SHMT2P34897 AC003957.1-201ENST00000625108 2673 ntBASIC19.86■□□□□ 0.77
SHMT2P34897 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SHMT2P34897 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SHMT2P34897 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.85■□□□□ 0.77
SHMT2P34897 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 KRT18P68-201ENST00000392293 1000 ntBASIC19.85■□□□□ 0.77
SHMT2P34897 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 LSM12P1-201ENST00000411836 588 ntBASIC19.85■□□□□ 0.77
SHMT2P34897 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
SHMT2P34897 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.85■□□□□ 0.77
SHMT2P34897 AL589743.5-201ENST00000616611 1050 ntBASIC19.85■□□□□ 0.77
SHMT2P34897 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.85■□□□□ 0.77
SHMT2P34897 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SHMT2P34897 AC087633.2-202ENST00000565166 1439 ntBASIC19.85■□□□□ 0.77
SHMT2P34897 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.84■□□□□ 0.77
SHMT2P34897 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.84■□□□□ 0.77
SHMT2P34897 AL355472.2-201ENST00000422958 438 ntBASIC19.84■□□□□ 0.77
SHMT2P34897 AC073210.2-201ENST00000430369 194 ntBASIC19.84■□□□□ 0.77
SHMT2P34897 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.84■□□□□ 0.77
SHMT2P34897 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.84■□□□□ 0.77
SHMT2P34897 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.84■□□□□ 0.77
SHMT2P34897 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.84■□□□□ 0.77
SHMT2P34897 AC133041.1-202ENST00000642053 222 ntBASIC19.84■□□□□ 0.77
SHMT2P34897 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SHMT2P34897 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.84■□□□□ 0.77
SHMT2P34897 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.84■□□□□ 0.77
SHMT2P34897 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHMT2P34897 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.84■□□□□ 0.77
SHMT2P34897 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SHMT2P34897 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHMT2P34897 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
SHMT2P34897 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.83■□□□□ 0.77
SHMT2P34897 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SHMT2P34897 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHMT2P34897 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.83■□□□□ 0.77
SHMT2P34897 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
SHMT2P34897 AC069152.1-201ENST00000438030 544 ntBASIC19.83■□□□□ 0.77
SHMT2P34897 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.83■□□□□ 0.77
SHMT2P34897 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.83■□□□□ 0.77
SHMT2P34897 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHMT2P34897 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHMT2P34897 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SHMT2P34897 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SHMT2P34897 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
SHMT2P34897 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
SHMT2P34897 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms