Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RBM17P1-201ENST00000453646 1190 ntBASIC25.89■■□□□ 1.74
COL5A3P25940 AC145285.6-201ENST00000604632 637 ntBASIC25.89■■□□□ 1.74
COL5A3P25940 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
COL5A3P25940 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
COL5A3P25940 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.74
COL5A3P25940 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL5A3P25940 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC25.88■■□□□ 1.73
COL5A3P25940 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.88■■□□□ 1.73
COL5A3P25940 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL5A3P25940 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
COL5A3P25940 DECR2-212ENST00000627716 352 ntTSL 2 BASIC25.88■■□□□ 1.73
COL5A3P25940 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
COL5A3P25940 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
COL5A3P25940 HTR7P1-201ENST00000538670 1336 ntBASIC25.88■■□□□ 1.73
COL5A3P25940 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL5A3P25940 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC25.88■■□□□ 1.73
COL5A3P25940 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
COL5A3P25940 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL5A3P25940 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
COL5A3P25940 AC079598.2-202ENST00000546624 1451 ntBASIC25.88■■□□□ 1.73
COL5A3P25940 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.87■■□□□ 1.73
COL5A3P25940 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC25.87■■□□□ 1.73
COL5A3P25940 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
COL5A3P25940 FAM197Y1-201ENST00000421178 764 ntBASIC25.87■■□□□ 1.73
COL5A3P25940 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC25.87■■□□□ 1.73
COL5A3P25940 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.87■■□□□ 1.73
COL5A3P25940 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
COL5A3P25940 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.87■■□□□ 1.73
COL5A3P25940 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.87■■□□□ 1.73
COL5A3P25940 AC092865.7-201ENST00000641832 219 ntBASIC25.87■■□□□ 1.73
COL5A3P25940 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL5A3P25940 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL5A3P25940 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL5A3P25940 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
COL5A3P25940 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
COL5A3P25940 AC113347.1-201ENST00000413321 391 ntBASIC25.86■■□□□ 1.73
COL5A3P25940 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL5A3P25940 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC25.86■■□□□ 1.73
COL5A3P25940 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.86■■□□□ 1.73
COL5A3P25940 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL5A3P25940 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL5A3P25940 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL5A3P25940 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC25.85■■□□□ 1.73
COL5A3P25940 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
COL5A3P25940 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.85■■□□□ 1.73
COL5A3P25940 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 PTBP1P-201ENST00000554374 1601 ntBASIC25.85■■□□□ 1.73
COL5A3P25940 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
COL5A3P25940 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.85■■□□□ 1.73
COL5A3P25940 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
COL5A3P25940 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL5A3P25940 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL5A3P25940 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.84■■□□□ 1.73
COL5A3P25940 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL5A3P25940 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL5A3P25940 AL390955.1-201ENST00000428694 934 ntBASIC25.84■■□□□ 1.73
COL5A3P25940 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.84■■□□□ 1.73
COL5A3P25940 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL5A3P25940 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.84■■□□□ 1.73
COL5A3P25940 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC25.84■■□□□ 1.73
COL5A3P25940 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC25.84■■□□□ 1.73
COL5A3P25940 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL5A3P25940 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC25.83■■□□□ 1.73
COL5A3P25940 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL5A3P25940 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL5A3P25940 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.72
COL5A3P25940 MMP23A-201ENST00000234610 1017 ntBASIC25.83■■□□□ 1.72
COL5A3P25940 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC25.83■■□□□ 1.72
COL5A3P25940 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.83■■□□□ 1.72
COL5A3P25940 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
COL5A3P25940 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.83■■□□□ 1.72
COL5A3P25940 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.83■■□□□ 1.72
COL5A3P25940 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.83■■□□□ 1.72
COL5A3P25940 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC25.82■■□□□ 1.72
COL5A3P25940 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.82■■□□□ 1.72
COL5A3P25940 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
COL5A3P25940 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 KRT8P36-201ENST00000489121 1440 ntBASIC25.82■■□□□ 1.72
COL5A3P25940 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL5A3P25940 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
COL5A3P25940 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms