Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
PCNAP12004 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCNAP12004 AC007322.3-201ENST00000426526 701 ntBASIC19.74■□□□□ 0.75
PCNAP12004 KRT18P11-201ENST00000435214 1283 ntBASIC19.74■□□□□ 0.75
PCNAP12004 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
PCNAP12004 AC010536.3-201ENST00000620306 533 ntBASIC19.74■□□□□ 0.75
PCNAP12004 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCNAP12004 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCNAP12004 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCNAP12004 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PCNAP12004 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.73■□□□□ 0.75
PCNAP12004 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PCNAP12004 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
PCNAP12004 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.73■□□□□ 0.75
PCNAP12004 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.73■□□□□ 0.75
PCNAP12004 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.73■□□□□ 0.75
PCNAP12004 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.73■□□□□ 0.75
PCNAP12004 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
PCNAP12004 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.73■□□□□ 0.75
PCNAP12004 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
PCNAP12004 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.73■□□□□ 0.75
PCNAP12004 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
PCNAP12004 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCNAP12004 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.73■□□□□ 0.75
PCNAP12004 AC027702.1-201ENST00000563810 1770 ntBASIC19.72■□□□□ 0.75
PCNAP12004 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCNAP12004 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCNAP12004 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCNAP12004 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCNAP12004 MIR935-201ENST00000401179 91 ntBASIC19.72■□□□□ 0.75
PCNAP12004 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 TERF1P5-201ENST00000477545 1207 ntBASIC19.72■□□□□ 0.75
PCNAP12004 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCNAP12004 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCNAP12004 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PCNAP12004 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
PCNAP12004 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PCNAP12004 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
PCNAP12004 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
PCNAP12004 RNF165-205ENST00000588679 2904 ntBASIC19.71■□□□□ 0.75
PCNAP12004 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PCNAP12004 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.71■□□□□ 0.75
PCNAP12004 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 CDV3P1-201ENST00000471403 739 ntBASIC19.71■□□□□ 0.75
PCNAP12004 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PCNAP12004 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.71■□□□□ 0.75
PCNAP12004 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.71■□□□□ 0.75
PCNAP12004 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
PCNAP12004 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.71■□□□□ 0.75
PCNAP12004 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
PCNAP12004 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCNAP12004 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.7■□□□□ 0.74
PCNAP12004 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCNAP12004 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCNAP12004 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCNAP12004 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
PCNAP12004 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.7■□□□□ 0.74
PCNAP12004 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.7■□□□□ 0.74
PCNAP12004 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.7■□□□□ 0.74
PCNAP12004 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.7■□□□□ 0.74
PCNAP12004 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PCNAP12004 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.7■□□□□ 0.74
PCNAP12004 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PCNAP12004 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.7■□□□□ 0.74
PCNAP12004 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCNAP12004 AP005212.1-201ENST00000581547 1997 ntBASIC19.7■□□□□ 0.74
PCNAP12004 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
PCNAP12004 AC007952.6-201ENST00000573168 2673 ntBASIC19.69■□□□□ 0.74
PCNAP12004 AC003957.1-201ENST00000625108 2673 ntBASIC19.69■□□□□ 0.74
PCNAP12004 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
PCNAP12004 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCNAP12004 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.69■□□□□ 0.74
PCNAP12004 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCNAP12004 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms