Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
COL1A1P02452 BRWD1-AS2-201ENST00000603064 1028 ntBASIC24.64■■□□□ 1.53
COL1A1P02452 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC24.64■■□□□ 1.53
COL1A1P02452 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC24.63■■□□□ 1.53
COL1A1P02452 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.63■■□□□ 1.53
COL1A1P02452 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC24.63■■□□□ 1.53
COL1A1P02452 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
COL1A1P02452 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
COL1A1P02452 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC24.63■■□□□ 1.53
COL1A1P02452 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
COL1A1P02452 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
COL1A1P02452 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
COL1A1P02452 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC24.63■■□□□ 1.53
COL1A1P02452 AC006557.6-201ENST00000623071 864 ntBASIC24.63■■□□□ 1.53
COL1A1P02452 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.63■■□□□ 1.53
COL1A1P02452 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL1A1P02452 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
COL1A1P02452 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC24.62■■□□□ 1.53
COL1A1P02452 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC24.62■■□□□ 1.53
COL1A1P02452 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
COL1A1P02452 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL1A1P02452 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.62■■□□□ 1.53
COL1A1P02452 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC24.62■■□□□ 1.53
COL1A1P02452 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
COL1A1P02452 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 SERF2-207ENST00000409614 582 ntTSL 2 BASIC24.61■■□□□ 1.53
COL1A1P02452 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC24.61■■□□□ 1.53
COL1A1P02452 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
COL1A1P02452 LINC01023-201ENST00000606054 436 ntBASIC24.61■■□□□ 1.53
COL1A1P02452 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL1A1P02452 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC24.6■■□□□ 1.53
COL1A1P02452 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC24.6■■□□□ 1.53
COL1A1P02452 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
COL1A1P02452 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC24.6■■□□□ 1.53
COL1A1P02452 ECEL1P3-201ENST00000427961 737 ntBASIC24.6■■□□□ 1.53
COL1A1P02452 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 RPS20-210ENST00000523936 899 ntTSL 2 BASIC24.6■■□□□ 1.53
COL1A1P02452 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
COL1A1P02452 PLK5-205ENST00000642079 1969 ntBASIC24.6■■□□□ 1.53
COL1A1P02452 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC24.6■■□□□ 1.53
COL1A1P02452 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
COL1A1P02452 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC24.6■■□□□ 1.53
COL1A1P02452 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
COL1A1P02452 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 FAM210CP-201ENST00000445714 574 ntBASIC24.59■■□□□ 1.53
COL1A1P02452 HES2-206ENST00000489730 730 ntTSL 2 BASIC24.59■■□□□ 1.53
COL1A1P02452 AC233702.5-201ENST00000584107 538 ntBASIC24.59■■□□□ 1.53
COL1A1P02452 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
COL1A1P02452 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
COL1A1P02452 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
COL1A1P02452 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
COL1A1P02452 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
COL1A1P02452 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC24.59■■□□□ 1.53
COL1A1P02452 AC026310.3-201ENST00000625186 2373 ntBASIC24.59■■□□□ 1.53
COL1A1P02452 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
COL1A1P02452 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL1A1P02452 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
COL1A1P02452 ISG20-202ENST00000379224 540 ntTSL 3 BASIC24.58■■□□□ 1.53
COL1A1P02452 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
COL1A1P02452 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms