Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.61■□□□□ 0.89
PDGFBP01127 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
PDGFBP01127 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDGFBP01127 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PDGFBP01127 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.6■□□□□ 0.89
PDGFBP01127 AC116562.2-201ENST00000507042 360 ntBASIC20.6■□□□□ 0.89
PDGFBP01127 AC091076.1-201ENST00000610741 619 ntBASIC20.6■□□□□ 0.89
PDGFBP01127 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDGFBP01127 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.6■□□□□ 0.89
PDGFBP01127 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 PGM5P4-201ENST00000421970 445 ntBASIC20.59■□□□□ 0.89
PDGFBP01127 LIN28AP1-201ENST00000429574 405 ntBASIC20.59■□□□□ 0.89
PDGFBP01127 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 ATP5G1P1-201ENST00000448724 379 ntBASIC20.59■□□□□ 0.89
PDGFBP01127 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.59■□□□□ 0.89
PDGFBP01127 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.59■□□□□ 0.89
PDGFBP01127 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PDGFBP01127 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PDGFBP01127 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFBP01127 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.58■□□□□ 0.89
PDGFBP01127 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.58■□□□□ 0.89
PDGFBP01127 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFBP01127 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
PDGFBP01127 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFBP01127 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFBP01127 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.58■□□□□ 0.89
PDGFBP01127 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDGFBP01127 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDGFBP01127 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDGFBP01127 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.58■□□□□ 0.88
PDGFBP01127 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDGFBP01127 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.58■□□□□ 0.88
PDGFBP01127 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDGFBP01127 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDGFBP01127 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.57■□□□□ 0.88
PDGFBP01127 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
PDGFBP01127 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.57■□□□□ 0.88
PDGFBP01127 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.57■□□□□ 0.88
PDGFBP01127 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.57■□□□□ 0.88
PDGFBP01127 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
PDGFBP01127 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.57■□□□□ 0.88
PDGFBP01127 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.57■□□□□ 0.88
PDGFBP01127 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDGFBP01127 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
PDGFBP01127 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PDGFBP01127 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PDGFBP01127 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 ECEL1P2-202ENST00000465689 757 ntBASIC20.56■□□□□ 0.88
PDGFBP01127 AC022616.7-201ENST00000525383 220 ntBASIC20.56■□□□□ 0.88
PDGFBP01127 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.56■□□□□ 0.88
PDGFBP01127 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.56■□□□□ 0.88
PDGFBP01127 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PDGFBP01127 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.56■□□□□ 0.88
PDGFBP01127 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDGFBP01127 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.55■□□□□ 0.88
PDGFBP01127 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PDGFBP01127 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms