Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RNF40O75150 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.81■■□□□ 1.08
RNF40O75150 AC138907.5-202ENST00000569484 235 ntBASIC21.81■■□□□ 1.08
RNF40O75150 AC010536.3-201ENST00000620306 533 ntBASIC21.81■■□□□ 1.08
RNF40O75150 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.81■■□□□ 1.08
RNF40O75150 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
RNF40O75150 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RNF40O75150 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
RNF40O75150 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.8■■□□□ 1.08
RNF40O75150 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.8■■□□□ 1.08
RNF40O75150 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.8■■□□□ 1.08
RNF40O75150 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 AC105036.2-201ENST00000569468 176 ntBASIC21.8■■□□□ 1.08
RNF40O75150 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.8■■□□□ 1.08
RNF40O75150 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
RNF40O75150 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
RNF40O75150 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.8■■□□□ 1.08
RNF40O75150 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RNF40O75150 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RNF40O75150 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.79■■□□□ 1.08
RNF40O75150 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.79■■□□□ 1.08
RNF40O75150 AC069152.1-201ENST00000438030 544 ntBASIC21.79■■□□□ 1.08
RNF40O75150 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 KRT18P20-201ENST00000548986 1279 ntBASIC21.79■■□□□ 1.08
RNF40O75150 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.79■■□□□ 1.08
RNF40O75150 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.79■■□□□ 1.08
RNF40O75150 MIR4651-201ENST00000582622 73 ntBASIC21.79■■□□□ 1.08
RNF40O75150 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.79■■□□□ 1.08
RNF40O75150 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
RNF40O75150 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RNF40O75150 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
RNF40O75150 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.78■■□□□ 1.08
RNF40O75150 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
RNF40O75150 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RNF40O75150 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF40O75150 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
RNF40O75150 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF40O75150 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 AC133552.2-202ENST00000575694 574 ntBASIC21.77■■□□□ 1.08
RNF40O75150 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RNF40O75150 AC066615.1-201ENST00000640911 628 ntBASIC21.77■■□□□ 1.08
RNF40O75150 AC133041.1-202ENST00000642053 222 ntBASIC21.77■■□□□ 1.08
RNF40O75150 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
RNF40O75150 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF40O75150 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
RNF40O75150 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms