Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.92■□□□□ 0.78
SDC3O75056 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SDC3O75056 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SDC3O75056 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.91■□□□□ 0.78
SDC3O75056 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.91■□□□□ 0.78
SDC3O75056 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 KRASP1-201ENST00000407852 552 ntBASIC19.91■□□□□ 0.78
SDC3O75056 ECEL1P3-201ENST00000427961 737 ntBASIC19.91■□□□□ 0.78
SDC3O75056 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SDC3O75056 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.91■□□□□ 0.78
SDC3O75056 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.91■□□□□ 0.78
SDC3O75056 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.91■□□□□ 0.78
SDC3O75056 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SDC3O75056 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
SDC3O75056 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.91■□□□□ 0.78
SDC3O75056 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.91■□□□□ 0.78
SDC3O75056 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SDC3O75056 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.9■□□□□ 0.78
SDC3O75056 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.9■□□□□ 0.78
SDC3O75056 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 TSPY7P-201ENST00000431358 1114 ntBASIC19.9■□□□□ 0.78
SDC3O75056 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SDC3O75056 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 AC073912.3-201ENST00000624414 853 ntBASIC19.9■□□□□ 0.78
SDC3O75056 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.9■□□□□ 0.78
SDC3O75056 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SDC3O75056 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
SDC3O75056 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SDC3O75056 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.89■□□□□ 0.77
SDC3O75056 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.89■□□□□ 0.77
SDC3O75056 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SDC3O75056 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SDC3O75056 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SDC3O75056 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.88■□□□□ 0.77
SDC3O75056 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SDC3O75056 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SDC3O75056 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SDC3O75056 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 RPS2P55-201ENST00000397318 883 ntBASIC19.88■□□□□ 0.77
SDC3O75056 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 AC107956.1-201ENST00000494359 873 ntBASIC19.88■□□□□ 0.77
SDC3O75056 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.88■□□□□ 0.77
SDC3O75056 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SDC3O75056 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.88■□□□□ 0.77
SDC3O75056 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SDC3O75056 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.88■□□□□ 0.77
SDC3O75056 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.87■□□□□ 0.77
SDC3O75056 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.87■□□□□ 0.77
SDC3O75056 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SDC3O75056 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SDC3O75056 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.87■□□□□ 0.77
SDC3O75056 AC012618.2-201ENST00000428058 849 ntBASIC19.87■□□□□ 0.77
SDC3O75056 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.87■□□□□ 0.77
SDC3O75056 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.87■□□□□ 0.77
SDC3O75056 AC233702.5-201ENST00000584107 538 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 198.1 ms