Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HOXC11O43248 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.78■□□□□ 0.92
HOXC11O43248 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXC11O43248 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC11O43248 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.78■□□□□ 0.92
HOXC11O43248 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXC11O43248 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXC11O43248 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HOXC11O43248 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HOXC11O43248 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
HOXC11O43248 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXC11O43248 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXC11O43248 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC11O43248 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC11O43248 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
HOXC11O43248 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC11O43248 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
HOXC11O43248 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC11O43248 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.77■□□□□ 0.92
HOXC11O43248 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HOXC11O43248 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HOXC11O43248 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXC11O43248 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXC11O43248 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.77■□□□□ 0.91
HOXC11O43248 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC11O43248 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC11O43248 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC11O43248 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.76■□□□□ 0.91
HOXC11O43248 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC11O43248 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.76■□□□□ 0.91
HOXC11O43248 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC11O43248 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC11O43248 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HOXC11O43248 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC11O43248 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HOXC11O43248 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXC11O43248 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXC11O43248 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.75■□□□□ 0.91
HOXC11O43248 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
HOXC11O43248 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 AC133681.1-201ENST00000465482 601 ntBASIC20.75■□□□□ 0.91
HOXC11O43248 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.75■□□□□ 0.91
HOXC11O43248 AC023632.3-201ENST00000521633 145 ntBASIC20.75■□□□□ 0.91
HOXC11O43248 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.75■□□□□ 0.91
HOXC11O43248 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC11O43248 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC11O43248 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC11O43248 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC11O43248 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC11O43248 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HOXC11O43248 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC11O43248 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC11O43248 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC11O43248 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC11O43248 AC124016.1-201ENST00000609552 612 ntBASIC20.74■□□□□ 0.91
HOXC11O43248 AC121338.2-201ENST00000622535 1744 ntBASIC20.74■□□□□ 0.91
HOXC11O43248 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HOXC11O43248 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC11O43248 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC11O43248 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC11O43248 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms