Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.87■■□□□ 1.25
MSH4O15457 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.87■■□□□ 1.25
MSH4O15457 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
MSH4O15457 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
MSH4O15457 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.86■■□□□ 1.25
MSH4O15457 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.86■■□□□ 1.25
MSH4O15457 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
MSH4O15457 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.86■■□□□ 1.25
MSH4O15457 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.86■■□□□ 1.25
MSH4O15457 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.86■■□□□ 1.25
MSH4O15457 AC060766.5-201ENST00000590539 871 ntBASIC22.86■■□□□ 1.25
MSH4O15457 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
MSH4O15457 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
MSH4O15457 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.85■■□□□ 1.25
MSH4O15457 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH4O15457 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH4O15457 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.85■■□□□ 1.25
MSH4O15457 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
MSH4O15457 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
MSH4O15457 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
MSH4O15457 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
MSH4O15457 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.85■■□□□ 1.25
MSH4O15457 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
MSH4O15457 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
MSH4O15457 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC22.84■■□□□ 1.25
MSH4O15457 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC22.84■■□□□ 1.25
MSH4O15457 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.84■■□□□ 1.25
MSH4O15457 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
MSH4O15457 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.84■■□□□ 1.25
MSH4O15457 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
MSH4O15457 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.83■■□□□ 1.25
MSH4O15457 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
MSH4O15457 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.83■■□□□ 1.25
MSH4O15457 GAS7-202ENST00000396115 929 ntTSL 5 BASIC22.83■■□□□ 1.25
MSH4O15457 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 TSPY20P-201ENST00000450910 630 ntBASIC22.83■■□□□ 1.25
MSH4O15457 UNC93B5-201ENST00000530315 699 ntBASIC22.83■■□□□ 1.25
MSH4O15457 PNMA6B-201ENST00000538162 1200 ntBASIC22.83■■□□□ 1.25
MSH4O15457 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.83■■□□□ 1.25
MSH4O15457 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
MSH4O15457 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.83■■□□□ 1.25
MSH4O15457 AC092368.3-202ENST00000574180 1591 ntBASIC22.83■■□□□ 1.25
MSH4O15457 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
MSH4O15457 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
MSH4O15457 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
MSH4O15457 MOK-233ENST00000524214 1539 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH4O15457 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
MSH4O15457 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.82■■□□□ 1.24
MSH4O15457 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.82■■□□□ 1.24
MSH4O15457 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
MSH4O15457 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH4O15457 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.82■■□□□ 1.24
MSH4O15457 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH4O15457 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH4O15457 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
MSH4O15457 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
MSH4O15457 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH4O15457 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH4O15457 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH4O15457 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.81■■□□□ 1.24
MSH4O15457 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
MSH4O15457 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH4O15457 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH4O15457 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
MSH4O15457 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH4O15457 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH4O15457 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms