Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC3O15379 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.76■□□□□ 0.75
HDAC3O15379 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC3O15379 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HDAC3O15379 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC3O15379 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC3O15379 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HDAC3O15379 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
HDAC3O15379 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.75■□□□□ 0.75
HDAC3O15379 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.75■□□□□ 0.75
HDAC3O15379 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC3O15379 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.75■□□□□ 0.75
HDAC3O15379 AC120498.10-201ENST00000621827 505 ntBASIC19.75■□□□□ 0.75
HDAC3O15379 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC3O15379 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC3O15379 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
HDAC3O15379 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC3O15379 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
HDAC3O15379 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
HDAC3O15379 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
HDAC3O15379 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 AC079140.4-201ENST00000507448 529 ntBASIC19.74■□□□□ 0.75
HDAC3O15379 AL354811.1-201ENST00000610286 706 ntBASIC19.74■□□□□ 0.75
HDAC3O15379 AC106739.1-201ENST00000617035 715 ntBASIC19.74■□□□□ 0.75
HDAC3O15379 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC3O15379 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC3O15379 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.74■□□□□ 0.75
HDAC3O15379 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC3O15379 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC3O15379 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.73■□□□□ 0.75
HDAC3O15379 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 AL020996.1-203ENST00000536896 2307 ntBASIC19.73■□□□□ 0.75
HDAC3O15379 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC3O15379 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC3O15379 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC3O15379 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.73■□□□□ 0.75
HDAC3O15379 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
HDAC3O15379 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.73■□□□□ 0.75
HDAC3O15379 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.73■□□□□ 0.75
HDAC3O15379 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDAC3O15379 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HDAC3O15379 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC3O15379 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC3O15379 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC3O15379 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
HDAC3O15379 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC3O15379 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC3O15379 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.72■□□□□ 0.75
HDAC3O15379 MIR939-201ENST00000401314 82 ntBASIC19.72■□□□□ 0.75
HDAC3O15379 AC096631.2-201ENST00000436136 790 ntBASIC19.72■□□□□ 0.75
HDAC3O15379 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.72■□□□□ 0.75
HDAC3O15379 AC091305.1-201ENST00000479476 895 ntBASIC19.72■□□□□ 0.75
HDAC3O15379 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HDAC3O15379 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 AL355001.2-201ENST00000620617 1191 ntBASIC19.72■□□□□ 0.75
HDAC3O15379 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
HDAC3O15379 TMEM179-206ENST00000616017 1645 ntBASIC19.72■□□□□ 0.75
HDAC3O15379 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDAC3O15379 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.72■□□□□ 0.75
HDAC3O15379 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HDAC3O15379 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.71■□□□□ 0.75
HDAC3O15379 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDAC3O15379 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms