Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
AP3B1O00203 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP3B1O00203 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP3B1O00203 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
AP3B1O00203 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP3B1O00203 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.52■□□□□ 0.88
AP3B1O00203 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.52■□□□□ 0.88
AP3B1O00203 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.52■□□□□ 0.88
AP3B1O00203 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.52■□□□□ 0.88
AP3B1O00203 AC137761.2-201ENST00000561729 223 ntBASIC20.52■□□□□ 0.88
AP3B1O00203 AC145350.3-201ENST00000569033 163 ntBASIC20.52■□□□□ 0.88
AP3B1O00203 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
AP3B1O00203 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
AP3B1O00203 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
AP3B1O00203 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.52■□□□□ 0.88
AP3B1O00203 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
AP3B1O00203 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
AP3B1O00203 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.87
AP3B1O00203 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
AP3B1O00203 AC087633.2-202ENST00000565166 1439 ntBASIC20.52■□□□□ 0.87
AP3B1O00203 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.52■□□□□ 0.87
AP3B1O00203 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
AP3B1O00203 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
AP3B1O00203 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.51■□□□□ 0.87
AP3B1O00203 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.51■□□□□ 0.87
AP3B1O00203 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.51■□□□□ 0.87
AP3B1O00203 AC087623.3-201ENST00000607047 1098 ntBASIC20.51■□□□□ 0.87
AP3B1O00203 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.51■□□□□ 0.87
AP3B1O00203 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
AP3B1O00203 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
AP3B1O00203 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
AP3B1O00203 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
AP3B1O00203 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
AP3B1O00203 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.5■□□□□ 0.87
AP3B1O00203 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
AP3B1O00203 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.5■□□□□ 0.87
AP3B1O00203 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.5■□□□□ 0.87
AP3B1O00203 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.5■□□□□ 0.87
AP3B1O00203 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
AP3B1O00203 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.5■□□□□ 0.87
AP3B1O00203 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
AP3B1O00203 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
AP3B1O00203 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.5■□□□□ 0.87
AP3B1O00203 AC099778.1-201ENST00000568593 1911 ntBASIC20.49■□□□□ 0.87
AP3B1O00203 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.49■□□□□ 0.87
AP3B1O00203 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.49■□□□□ 0.87
AP3B1O00203 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.49■□□□□ 0.87
AP3B1O00203 AC016769.1-201ENST00000409132 1010 ntBASIC20.49■□□□□ 0.87
AP3B1O00203 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.49■□□□□ 0.87
AP3B1O00203 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
AP3B1O00203 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.49■□□□□ 0.87
AP3B1O00203 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.49■□□□□ 0.87
AP3B1O00203 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
AP3B1O00203 AL356652.1-201ENST00000615962 565 ntBASIC20.49■□□□□ 0.87
AP3B1O00203 AC100791.3-201ENST00000617619 330 ntBASIC20.49■□□□□ 0.87
AP3B1O00203 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.49■□□□□ 0.87
AP3B1O00203 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.49■□□□□ 0.87
AP3B1O00203 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
AP3B1O00203 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.48■□□□□ 0.87
AP3B1O00203 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
AP3B1O00203 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.48■□□□□ 0.87
AP3B1O00203 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms