Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPIPA3F8WFD2 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPIPA3F8WFD2 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPIPA3F8WFD2 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPIPA3F8WFD2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPIPA3F8WFD2 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 AC093827.2-201ENST00000512654 315 ntBASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 AC060766.5-201ENST00000590539 871 ntBASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPIPA3F8WFD2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 RPS2P52-201ENST00000469610 820 ntBASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 HLA-B-256ENST00000639848 1089 ntBASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.48■□□□□ 0.55
NPIPA3F8WFD2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 AL158047.1-201ENST00000445918 881 ntBASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 AC098590.1-201ENST00000468126 897 ntBASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
NPIPA3F8WFD2 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 AC092368.3-202ENST00000574180 1591 ntBASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
NPIPA3F8WFD2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
NPIPA3F8WFD2 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPIPA3F8WFD2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPIPA3F8WFD2 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms