Protein–RNA interactions for Protein: Q9P2D1

CHD7, Chromodomain-helicase-DNA-binding protein 7, humanhuman

Predictions only

Length 2,997 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7Q9P2D1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.8■■□□□ 1.08
CHD7Q9P2D1 AL390955.1-201ENST00000428694 934 ntBASIC21.8■■□□□ 1.08
CHD7Q9P2D1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CHD7Q9P2D1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 WWOX-216ENST00000569818 525 ntBASIC21.79■■□□□ 1.08
CHD7Q9P2D1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 AL355355.2-201ENST00000442321 338 ntBASIC21.79■■□□□ 1.08
CHD7Q9P2D1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHD7Q9P2D1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 AL353807.1-201ENST00000427475 662 ntBASIC21.78■■□□□ 1.08
CHD7Q9P2D1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 SLC25A3P1-201ENST00000443844 931 ntBASIC21.78■■□□□ 1.08
CHD7Q9P2D1 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHD7Q9P2D1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.77■■□□□ 1.08
CHD7Q9P2D1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 AL121894.2-201ENST00000602977 491 ntBASIC21.77■■□□□ 1.08
CHD7Q9P2D1 AC006011.2-201ENST00000621313 1158 ntBASIC21.77■■□□□ 1.08
CHD7Q9P2D1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 LINC01568-207ENST00000641790 1380 ntBASIC21.77■■□□□ 1.08
CHD7Q9P2D1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHD7Q9P2D1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CHD7Q9P2D1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 AC104076.2-201ENST00000448912 469 ntBASIC21.76■■□□□ 1.07
CHD7Q9P2D1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.76■■□□□ 1.07
CHD7Q9P2D1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHD7Q9P2D1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms