Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
DDX56Q9NY93 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 TERF1P5-201ENST00000477545 1207 ntBASIC21.2■□□□□ 0.98
DDX56Q9NY93 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX56Q9NY93 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX56Q9NY93 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 AC010536.3-201ENST00000620306 533 ntBASIC21.19■□□□□ 0.98
DDX56Q9NY93 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX56Q9NY93 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
DDX56Q9NY93 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX56Q9NY93 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX56Q9NY93 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX56Q9NY93 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 KRT18P11-201ENST00000435214 1283 ntBASIC21.18■□□□□ 0.98
DDX56Q9NY93 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 AL591742.1-201ENST00000604433 565 ntBASIC21.18■□□□□ 0.98
DDX56Q9NY93 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX56Q9NY93 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX56Q9NY93 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX56Q9NY93 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX56Q9NY93 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 PGM5P4-201ENST00000421970 445 ntBASIC21.17■□□□□ 0.98
DDX56Q9NY93 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
DDX56Q9NY93 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX56Q9NY93 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX56Q9NY93 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
DDX56Q9NY93 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX56Q9NY93 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.16■□□□□ 0.98
DDX56Q9NY93 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
DDX56Q9NY93 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
DDX56Q9NY93 AC087623.3-201ENST00000607047 1098 ntBASIC21.16■□□□□ 0.98
DDX56Q9NY93 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX56Q9NY93 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 AL391422.3-201ENST00000603791 2761 ntBASIC21.15■□□□□ 0.98
DDX56Q9NY93 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
DDX56Q9NY93 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms