Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 AC097658.1-201ENST00000475555 843 ntBASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 AC091874.3-201ENST00000512672 1195 ntBASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 AL356652.1-201ENST00000615962 565 ntBASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 AC105020.6-201ENST00000621523 1217 ntBASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 MIR2861-201ENST00000636310 90 ntBASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRIM39Q9HCM9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 AC006128.1-201ENST00000624704 1661 ntBASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM39Q9HCM9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 MYC-209ENST00000641252 345 ntBASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM39Q9HCM9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TRIM39Q9HCM9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRIM39Q9HCM9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 AL121603.2-201ENST00000557373 2117 ntBASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.14■□□□□ 0.81
TRIM39Q9HCM9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRIM39Q9HCM9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms