Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.98■□□□□ 0.95
USP29Q9HBJ7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP29Q9HBJ7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 AC092720.2-201ENST00000602388 1665 ntBASIC20.96■□□□□ 0.95
USP29Q9HBJ7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 AL121832.2-201ENST00000610979 668 ntBASIC20.96■□□□□ 0.95
USP29Q9HBJ7 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP29Q9HBJ7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
USP29Q9HBJ7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
USP29Q9HBJ7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 MYCNOS-205ENST00000641950 531 ntBASIC20.95■□□□□ 0.94
USP29Q9HBJ7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USP29Q9HBJ7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 AC099778.1-201ENST00000568593 1911 ntBASIC20.94■□□□□ 0.94
USP29Q9HBJ7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.94■□□□□ 0.94
USP29Q9HBJ7 AC007322.3-201ENST00000426526 701 ntBASIC20.94■□□□□ 0.94
USP29Q9HBJ7 AC007322.1-201ENST00000426983 750 ntBASIC20.94■□□□□ 0.94
USP29Q9HBJ7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
USP29Q9HBJ7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms