Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 AC007225.1-201ENST00000566331 1836 ntBASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 DUX4L16-201ENST00000555130 1264 ntBASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 LINC01006-201ENST00000333319 2292 ntBASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEC61A2Q9H9S3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 AC116050.2-201ENST00000612102 1779 ntBASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SEC61A2Q9H9S3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SEC61A2Q9H9S3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 SLC7A5P1-201ENST00000568957 537 ntBASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.2■□□□□ 0.5
SEC61A2Q9H9S3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 AC010536.3-201ENST00000620306 533 ntBASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SEC61A2Q9H9S3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 RBM17P2-201ENST00000616397 1405 ntBASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEC61A2Q9H9S3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms