Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL12A1Q99715 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.96■□□□□ 0.47
COL12A1Q99715 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.96■□□□□ 0.47
COL12A1Q99715 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL12A1Q99715 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL12A1Q99715 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL12A1Q99715 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.95■□□□□ 0.46
COL12A1Q99715 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 AP000593.1-201ENST00000393668 712 ntBASIC17.95■□□□□ 0.46
COL12A1Q99715 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.95■□□□□ 0.46
COL12A1Q99715 KRT18P16-201ENST00000510337 1294 ntBASIC17.95■□□□□ 0.46
COL12A1Q99715 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.95■□□□□ 0.46
COL12A1Q99715 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL12A1Q99715 CDV3P1-201ENST00000471403 739 ntBASIC17.95■□□□□ 0.46
COL12A1Q99715 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.95■□□□□ 0.46
COL12A1Q99715 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 HTR7P1-201ENST00000538670 1336 ntBASIC17.94■□□□□ 0.46
COL12A1Q99715 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 AC093458.2-201ENST00000623150 629 ntBASIC17.94■□□□□ 0.46
COL12A1Q99715 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.94■□□□□ 0.46
COL12A1Q99715 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL12A1Q99715 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.94■□□□□ 0.46
COL12A1Q99715 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.94■□□□□ 0.46
COL12A1Q99715 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.94■□□□□ 0.46
COL12A1Q99715 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.94■□□□□ 0.46
COL12A1Q99715 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.94■□□□□ 0.46
COL12A1Q99715 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL12A1Q99715 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL12A1Q99715 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.93■□□□□ 0.46
COL12A1Q99715 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.93■□□□□ 0.46
COL12A1Q99715 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL12A1Q99715 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.93■□□□□ 0.46
COL12A1Q99715 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.92■□□□□ 0.46
COL12A1Q99715 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
COL12A1Q99715 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL12A1Q99715 LIN28AP1-201ENST00000429574 405 ntBASIC17.92■□□□□ 0.46
COL12A1Q99715 FAM207BP-201ENST00000447172 505 ntBASIC17.92■□□□□ 0.46
COL12A1Q99715 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.92■□□□□ 0.46
COL12A1Q99715 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.92■□□□□ 0.46
COL12A1Q99715 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
COL12A1Q99715 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC17.92■□□□□ 0.46
COL12A1Q99715 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 INGX-201ENST00000359239 846 ntBASIC17.92■□□□□ 0.46
COL12A1Q99715 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.92■□□□□ 0.46
COL12A1Q99715 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 NAPSB-206ENST00000562112 1266 ntBASIC17.92■□□□□ 0.46
COL12A1Q99715 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.92■□□□□ 0.46
COL12A1Q99715 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL12A1Q99715 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.92■□□□□ 0.46
COL12A1Q99715 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.92■□□□□ 0.46
COL12A1Q99715 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.92■□□□□ 0.46
COL12A1Q99715 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL12A1Q99715 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL12A1Q99715 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL12A1Q99715 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.91■□□□□ 0.46
COL12A1Q99715 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL12A1Q99715 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.91■□□□□ 0.46
COL12A1Q99715 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.91■□□□□ 0.46
COL12A1Q99715 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL12A1Q99715 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.91■□□□□ 0.46
COL12A1Q99715 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL12A1Q99715 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL12A1Q99715 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL12A1Q99715 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL12A1Q99715 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms