Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC087633.2-202ENST00000565166 1439 ntBASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD1Q96NR3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 DUSP5P2-201ENST00000426873 1033 ntBASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 AC097658.1-201ENST00000475555 843 ntBASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTCHD1Q96NR3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 AC091874.3-201ENST00000512672 1195 ntBASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 AL356652.1-201ENST00000615962 565 ntBASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 AC105020.6-201ENST00000621523 1217 ntBASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 AC006128.1-201ENST00000624704 1661 ntBASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTCHD1Q96NR3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTCHD1Q96NR3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms