Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 IP6K1-209ENST00000613416 4806 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.644e-7■■■■□ 25.3
UPF1Q92900 NUBP2-215ENST00000568834 1173 ntTSL 227.42■■□□□ 1.981e-6■■■■□ 25.3
UPF1Q92900 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.621e-6■■■■□ 25.3
UPF1Q92900 NUBP2-211ENST00000567700 2196 ntTSL 222.43■■□□□ 1.181e-6■■■■□ 25.3
UPF1Q92900 LINC00888-202ENST00000471496 1490 ntTSL 3 BASIC17.02■□□□□ 0.327e-7■■■■□ 25.3
UPF1Q92900 SORD-201ENST00000267814 4909 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.843e-9■■■■□ 25.2
UPF1Q92900 CTSD-205ENST00000438213 946 ntTSL 222.37■■□□□ 1.177e-13■■■■□ 25.2
UPF1Q92900 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.03■□□□□ 0.488e-8■■■■□ 25.2
UPF1Q92900 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.348e-8■■■■□ 25.2
UPF1Q92900 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC15.38■□□□□ 0.055e-6■■■■□ 25.2
UPF1Q92900 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.075e-6■■■■□ 25.2
UPF1Q92900 SAP30BP-217ENST00000582022 2409 ntTSL 1 (best)14.54□□□□□ -0.085e-6■■■■□ 25.2
UPF1Q92900 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.641e-7■■■■□ 25.2
UPF1Q92900 TMEM184B-213ENST00000633438 1369 ntTSL 520.46■□□□□ 0.871e-6■■■■□ 25.2
UPF1Q92900 GOT1-201ENST00000370508 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.433e-7■■■■□ 25.2
UPF1Q92900 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.65■□□□□ 0.583e-7■■■■□ 25.2
UPF1Q92900 ADGRD1-213ENST00000543617 1182 ntTSL 1 (best) BASIC15.76■□□□□ 0.112e-8■■■■□ 25.2
UPF1Q92900 ADGRD1-205ENST00000535015 2776 ntTSL 1 (best) BASIC10.91□□□□□ -0.662e-8■■■■□ 25.2
UPF1Q92900 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC36.92■■■■□ 3.52e-6■■■■□ 25.2
UPF1Q92900 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.642e-6■■■■□ 25.2
UPF1Q92900 BCL7B-211ENST00000486818 1404 ntTSL 517.47■□□□□ 0.392e-6■■■■□ 25.2
UPF1Q92900 BCL7B-213ENST00000493671 1802 ntTSL 216.3■□□□□ 0.22e-6■■■■□ 25.2
UPF1Q92900 BCL7B-210ENST00000482231 1638 ntTSL 215.37■□□□□ 0.052e-6■■■■□ 25.2
UPF1Q92900 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.015e-7■■■■□ 25.2
UPF1Q92900 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.045e-7■■■■□ 25.2
UPF1Q92900 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.115e-7■■■■□ 25.2
UPF1Q92900 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.018e-8■■■■□ 25.2
UPF1Q92900 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.46□□□□□ -0.268e-8■■■■□ 25.2
UPF1Q92900 RABGEF1-211ENST00000503687 4139 ntTSL 212.98□□□□□ -0.338e-8■■■■□ 25.2
UPF1Q92900 KCTD7-209ENST00000640385 4118 ntTSL 5 BASIC12.6□□□□□ -0.398e-8■■■■□ 25.2
UPF1Q92900 KCTD7-211ENST00000640851 3745 ntTSL 5 BASIC12.48□□□□□ -0.418e-8■■■■□ 25.2
UPF1Q92900 KCTD7-208ENST00000640234 1704 ntTSL 512.09□□□□□ -0.478e-8■■■■□ 25.2
UPF1Q92900 KCTD7-207ENST00000639879 5098 ntTSL 4 BASIC11.23□□□□□ -0.618e-8■■■■□ 25.2
UPF1Q92900 KCTD7-204ENST00000638524 3747 ntTSL 510.27□□□□□ -0.778e-8■■■■□ 25.2
UPF1Q92900 KCTD7-205ENST00000638540 4471 ntTSL 59.06□□□□□ -0.968e-8■■■■□ 25.2
UPF1Q92900 PNPO-215ENST00000641709 3232 nt14.57□□□□□ -0.085e-7■■■■□ 25.2
UPF1Q92900 AC018521.1-201ENST00000582262 575 ntTSL 414.14□□□□□ -0.155e-7■■■■□ 25.2
UPF1Q92900 PNPO-217ENST00000642017 3465 ntAPPRIS P1 BASIC13.38□□□□□ -0.275e-7■■■■□ 25.2
UPF1Q92900 PNPO-211ENST00000641323 3657 nt11.21□□□□□ -0.615e-7■■■■□ 25.2
UPF1Q92900 PNPO-207ENST00000584806 2940 ntTSL 38.75□□□□□ -1.015e-7■■■■□ 25.2
UPF1Q92900 PNPO-212ENST00000641427 1411 nt17.25■□□□□ 0.353e-7■■■■□ 25.2
UPF1Q92900 PNPO-214ENST00000641703 1131 nt16.91■□□□□ 0.33e-7■■■■□ 25.2
UPF1Q92900 PNPO-203ENST00000582171 1372 ntTSL 215.85■□□□□ 0.133e-7■■■■□ 25.2
UPF1Q92900 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC32.52■■■□□ 2.89e-7■■■■□ 25.2
UPF1Q92900 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.17■■■□□ 2.267e-7■■■■□ 25.2
UPF1Q92900 EMD-205ENST00000471965 800 ntTSL 228.75■■■□□ 2.191e-18■■■■□ 25.2
UPF1Q92900 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.831e-18■■■■□ 25.2
UPF1Q92900 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.537e-7■■■■□ 25.2
UPF1Q92900 NRM-206ENST00000470733 1453 ntTSL 222.64■■□□□ 1.217e-7■■■■□ 25.2
UPF1Q92900 AL391422.3-201ENST00000603791 2761 ntBASIC22.58■■□□□ 1.27e-7■■■■□ 25.2
UPF1Q92900 NRM-205ENST00000462857 1260 ntTSL 221.95■■□□□ 1.17e-7■■■■□ 25.2
UPF1Q92900 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.891e-6■■■■□ 25.2
UPF1Q92900 NRM-207ENST00000474864 1029 ntTSL 1 (best)20.46■□□□□ 0.877e-7■■■■□ 25.2
UPF1Q92900 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.847e-7■■■■□ 25.2
UPF1Q92900 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.19■□□□□ 0.827e-7■■■■□ 25.2
UPF1Q92900 NRM-209ENST00000495946 1203 ntTSL 219.98■□□□□ 0.797e-7■■■■□ 25.2
UPF1Q92900 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.65■□□□□ 0.747e-7■■■■□ 25.2
UPF1Q92900 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC18.76■□□□□ 0.591e-6■■■■□ 25.2
UPF1Q92900 NRM-204ENST00000444096 1401 ntAPPRIS ALT2 TSL 318.68■□□□□ 0.587e-7■■■■□ 25.2
UPF1Q92900 NRM-208ENST00000482141 1199 ntTSL 218.58■□□□□ 0.567e-7■■■■□ 25.2
UPF1Q92900 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.72■□□□□ 0.271e-6■■■■□ 25.2
UPF1Q92900 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.047e-7■■■■□ 25.2
UPF1Q92900 HSD17B7-201ENST00000254521 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.247e-7■■■■□ 25.2
UPF1Q92900 HSD17B7-208ENST00000485405 2541 ntTSL 213.01□□□□□ -0.337e-7■■■■□ 25.2
UPF1Q92900 NQO1-205ENST00000561500 891 ntTSL 3 BASIC11.27□□□□□ -0.617e-7■■■■□ 25.2
UPF1Q92900 BIN3-208ENST00000520489 3589 ntTSL 210.1□□□□□ -0.791e-6■■■■□ 25.2
UPF1Q92900 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC9.1□□□□□ -0.957e-7■■■■□ 25.2
UPF1Q92900 HSD17B7-206ENST00000470195 593 ntTSL 38.4□□□□□ -1.067e-7■■■■□ 25.2
UPF1Q92900 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.087e-7■■■■□ 25.2
UPF1Q92900 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.247e-7■■■■□ 25.2
UPF1Q92900 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.46e-10■■■■□ 25.2
UPF1Q92900 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.296e-10■■■■□ 25.2
UPF1Q92900 SDE2-201ENST00000272091 3975 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.154e-7■■■■□ 25.1
UPF1Q92900 COLGALT2-204ENST00000486375 587 ntTSL 215.83■□□□□ 0.125e-7■■■■□ 25.1
UPF1Q92900 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.025e-7■■■■□ 25.1
UPF1Q92900 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC8.54□□□□□ -1.045e-7■■■■□ 25.1
UPF1Q92900 KIAA0513-203ENST00000562388 733 ntTSL 224.06■■□□□ 1.442e-7■■■■□ 25.1
UPF1Q92900 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.06□□□□□ -0.322e-7■■■■□ 25.1
UPF1Q92900 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.412e-7■■■■□ 25.1
UPF1Q92900 KIAA0513-206ENST00000566428 7772 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-7■■■■□ 25.1
UPF1Q92900 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.283e-6■■■■□ 25.1
UPF1Q92900 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.93■□□□□ 0.943e-6■■■■□ 25.1
UPF1Q92900 XYLT2-206ENST00000571021 2174 nt15.9■□□□□ 0.143e-6■■■■□ 25.1
UPF1Q92900 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.123e-6■■■■□ 25.1
UPF1Q92900 XYLT2-202ENST00000376550 3267 ntTSL 1 (best)11.96□□□□□ -0.493e-6■■■■□ 25.1
UPF1Q92900 C7orf49-204ENST00000459937 2576 ntTSL 1 (best)9.1□□□□□ -0.951e-6■■■■□ 25.1
UPF1Q92900 AGTRAP-210ENST00000491346 1116 ntTSL 522.33■■□□□ 1.174e-7■■■■□ 25.1
UPF1Q92900 AGTRAP-214ENST00000514733 919 ntTSL 319.06■□□□□ 0.644e-7■■■■□ 25.1
UPF1Q92900 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.172e-7■■■■□ 25.1
UPF1Q92900 LRRC8A-202ENST00000372599 4161 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.322e-7■■■■□ 25.1
UPF1Q92900 LRRC8A-201ENST00000259324 4619 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.412e-7■■■■□ 25.1
UPF1Q92900 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.371e-6■■■■□ 25.1
UPF1Q92900 ANKRD54-210ENST00000498417 2403 ntTSL 215.78■□□□□ 0.121e-6■■■■□ 25.1
UPF1Q92900 FN3KRP-207ENST00000574832 1422 ntTSL 227.09■■□□□ 1.939e-17■■■■□ 25.1
UPF1Q92900 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.679e-17■■■■□ 25.1
UPF1Q92900 FN3KRP-203ENST00000571594 625 ntTSL 317.46■□□□□ 0.399e-17■■■■□ 25.1
UPF1Q92900 BOLA3-AS1-203ENST00000533563 1599 ntTSL 2 BASIC14.18□□□□□ -0.142e-6■■■■□ 25.1
UPF1Q92900 BOLA3-AS1-201ENST00000423477 1804 ntTSL 1 (best)13.32□□□□□ -0.282e-6■■■■□ 25.1
UPF1Q92900 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.69■■□□□ 1.061e-11■■■■□ 25.1
UPF1Q92900 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.991e-11■■■■□ 25.1
Retrieved 100 of 15,879 protein–RNA pairs in 186.2 ms