Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SLC44A3Q8N4M1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 AF186192.3-201ENST00000583427 947 ntBASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SLC44A3Q8N4M1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 ARMC10P1-201ENST00000313754 855 ntBASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SLC44A3Q8N4M1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.95■□□□□ 0.95
SLC44A3Q8N4M1 C1orf229-201ENST00000623686 2258 ntBASIC20.95■□□□□ 0.95
SLC44A3Q8N4M1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 HTR7P1-201ENST00000538670 1336 ntBASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SLC44A3Q8N4M1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.94■□□□□ 0.94
SLC44A3Q8N4M1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 KRT16P5-201ENST00000455284 522 ntBASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 AL121829.2-201ENST00000620908 328 ntBASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SLC44A3Q8N4M1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 AL049597.2-201ENST00000565575 961 ntBASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 AC092865.7-201ENST00000641832 219 ntBASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SLC44A3Q8N4M1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms