Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.06■■□□□ 1.12
VPS52Q8N1B4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 HES2-205ENST00000487437 968 ntTSL 3 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.05■■□□□ 1.12
VPS52Q8N1B4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.04■■□□□ 1.12
VPS52Q8N1B4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 RPPH1-201ENST00000516869 333 ntBASIC22.04■■□□□ 1.12
VPS52Q8N1B4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 C1QBPP2-201ENST00000528754 825 ntBASIC22.04■■□□□ 1.12
VPS52Q8N1B4 FAM197Y4-202ENST00000622692 608 ntBASIC22.04■■□□□ 1.12
VPS52Q8N1B4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.04■■□□□ 1.12
VPS52Q8N1B4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.03■■□□□ 1.12
VPS52Q8N1B4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22.03■■□□□ 1.12
VPS52Q8N1B4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 SOX15-203ENST00000570788 1093 ntBASIC22.02■■□□□ 1.12
VPS52Q8N1B4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC22.02■■□□□ 1.12
VPS52Q8N1B4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
VPS52Q8N1B4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.01■■□□□ 1.11
VPS52Q8N1B4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
VPS52Q8N1B4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms