Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NUDCD3Q8IVD9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NUDCD3Q8IVD9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 AC099791.1-201ENST00000416440 715 ntBASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NUDCD3Q8IVD9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 AC008175.2-201ENST00000612840 297 ntBASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 AC135279.3-201ENST00000610945 1311 ntBASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.16■□□□□ 0.82
NUDCD3Q8IVD9 AC125437.2-201ENST00000625180 2167 ntBASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 POU5F1P4-201ENST00000413175 1085 ntBASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
NUDCD3Q8IVD9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 RARRES2P11-201ENST00000635158 484 ntBASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 AL158211.5-201ENST00000623583 2518 ntBASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NUDCD3Q8IVD9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 MIR572-201ENST00000384983 95 ntBASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NUDCD3Q8IVD9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms