Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC58Q4VC31 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 AC005082.1-201ENST00000413042 2259 ntBASIC18.13■□□□□ 0.49
CCDC58Q4VC31 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 AC053503.5-201ENST00000601508 636 ntBASIC18.13■□□□□ 0.49
CCDC58Q4VC31 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC58Q4VC31 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 AC098818.2-201ENST00000564925 2320 ntBASIC18.12■□□□□ 0.49
CCDC58Q4VC31 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 LTB4R2-202ENST00000528054 3092 ntBASIC18.12■□□□□ 0.49
CCDC58Q4VC31 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 MIR4767-201ENST00000582827 78 ntBASIC18.12■□□□□ 0.49
CCDC58Q4VC31 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 AC112907.3-201ENST00000577781 2400 ntBASIC18.12■□□□□ 0.49
CCDC58Q4VC31 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 AC092720.2-201ENST00000602388 1665 ntBASIC18.12■□□□□ 0.49
CCDC58Q4VC31 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC58Q4VC31 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 AC131281.2-201ENST00000520478 145 ntBASIC18.11■□□□□ 0.49
CCDC58Q4VC31 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 EEF1DP3-203ENST00000566025 782 ntBASIC18.11■□□□□ 0.49
CCDC58Q4VC31 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC58Q4VC31 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC58Q4VC31 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms