Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
H3F3AP84243 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.22■□□□□ 0.51
H3F3AP84243 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.22■□□□□ 0.51
H3F3AP84243 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
H3F3AP84243 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
H3F3AP84243 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
H3F3AP84243 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.22■□□□□ 0.51
H3F3AP84243 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.22■□□□□ 0.51
H3F3AP84243 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
H3F3AP84243 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
H3F3AP84243 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
H3F3AP84243 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
H3F3AP84243 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 AL355472.2-201ENST00000422958 438 ntBASIC18.2■□□□□ 0.5
H3F3AP84243 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.2■□□□□ 0.5
H3F3AP84243 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.2■□□□□ 0.5
H3F3AP84243 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 SLC25A24-204ENST00000569674 2357 ntBASIC18.19■□□□□ 0.5
H3F3AP84243 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
H3F3AP84243 FEM1AP1-201ENST00000431297 1995 ntBASIC18.19■□□□□ 0.5
H3F3AP84243 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
H3F3AP84243 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
H3F3AP84243 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
H3F3AP84243 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 AC105020.6-201ENST00000621523 1217 ntBASIC18.19■□□□□ 0.5
H3F3AP84243 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 KRT17P1-201ENST00000399211 1546 ntBASIC18.18■□□□□ 0.5
H3F3AP84243 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.18■□□□□ 0.5
H3F3AP84243 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 MIPEPP3-201ENST00000412105 444 ntBASIC18.18■□□□□ 0.5
H3F3AP84243 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.18■□□□□ 0.5
H3F3AP84243 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.18■□□□□ 0.5
H3F3AP84243 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.18■□□□□ 0.5
H3F3AP84243 AL589743.5-201ENST00000616611 1050 ntBASIC18.18■□□□□ 0.5
H3F3AP84243 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.18■□□□□ 0.5
H3F3AP84243 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.18■□□□□ 0.5
H3F3AP84243 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms