Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
H3F3AP84243 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.22■□□□□ 0.51
H3F3AP84243 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.22■□□□□ 0.51
H3F3AP84243 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
H3F3AP84243 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
H3F3AP84243 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
H3F3AP84243 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.22■□□□□ 0.51
H3F3AP84243 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.22■□□□□ 0.51
H3F3AP84243 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
H3F3AP84243 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
H3F3AP84243 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
H3F3AP84243 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
H3F3AP84243 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
H3F3AP84243 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
H3F3AP84243 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
H3F3AP84243 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 AL355472.2-201ENST00000422958 438 ntBASIC18.2■□□□□ 0.5
H3F3AP84243 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.2■□□□□ 0.5
H3F3AP84243 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.2■□□□□ 0.5
H3F3AP84243 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
H3F3AP84243 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.2■□□□□ 0.5
H3F3AP84243 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
H3F3AP84243 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 SLC25A24-204ENST00000569674 2357 ntBASIC18.19■□□□□ 0.5
H3F3AP84243 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
H3F3AP84243 FEM1AP1-201ENST00000431297 1995 ntBASIC18.19■□□□□ 0.5
H3F3AP84243 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
H3F3AP84243 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
H3F3AP84243 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
H3F3AP84243 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 AC105020.6-201ENST00000621523 1217 ntBASIC18.19■□□□□ 0.5
H3F3AP84243 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
H3F3AP84243 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
H3F3AP84243 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 KRT17P1-201ENST00000399211 1546 ntBASIC18.18■□□□□ 0.5
H3F3AP84243 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.18■□□□□ 0.5
H3F3AP84243 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 MIPEPP3-201ENST00000412105 444 ntBASIC18.18■□□□□ 0.5
H3F3AP84243 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.18■□□□□ 0.5
H3F3AP84243 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.18■□□□□ 0.5
H3F3AP84243 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.18■□□□□ 0.5
H3F3AP84243 AL589743.5-201ENST00000616611 1050 ntBASIC18.18■□□□□ 0.5
H3F3AP84243 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.18■□□□□ 0.5
H3F3AP84243 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.18■□□□□ 0.5
H3F3AP84243 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
H3F3AP84243 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms