Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC083880.1-201ENST00000608266 535 ntBASIC18.87■□□□□ 0.61
RNF4P78317 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.87■□□□□ 0.61
RNF4P78317 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
RNF4P78317 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF4P78317 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RNF4P78317 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 KRT8P36-201ENST00000489121 1440 ntBASIC18.86■□□□□ 0.61
RNF4P78317 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF4P78317 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF4P78317 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF4P78317 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.86■□□□□ 0.61
RNF4P78317 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.86■□□□□ 0.61
RNF4P78317 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF4P78317 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF4P78317 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF4P78317 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF4P78317 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF4P78317 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF4P78317 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
RNF4P78317 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
RNF4P78317 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
RNF4P78317 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.85■□□□□ 0.61
RNF4P78317 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF4P78317 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RNF4P78317 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.85■□□□□ 0.61
RNF4P78317 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
RNF4P78317 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
RNF4P78317 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF4P78317 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RNF4P78317 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RNF4P78317 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF4P78317 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RNF4P78317 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF4P78317 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
RNF4P78317 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.84■□□□□ 0.61
RNF4P78317 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF4P78317 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
RNF4P78317 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RNF4P78317 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.84■□□□□ 0.61
RNF4P78317 FP700111.2-201ENST00000619190 1892 ntBASIC18.84■□□□□ 0.61
RNF4P78317 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF4P78317 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF4P78317 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RNF4P78317 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.83■□□□□ 0.61
RNF4P78317 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF4P78317 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RNF4P78317 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.83■□□□□ 0.6
RNF4P78317 CD99P1-205ENST00000527459 561 ntBASIC18.83■□□□□ 0.6
RNF4P78317 C2orf69P4-201ENST00000565394 541 ntBASIC18.83■□□□□ 0.6
RNF4P78317 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.83■□□□□ 0.6
RNF4P78317 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF4P78317 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF4P78317 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF4P78317 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RNF4P78317 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF4P78317 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF4P78317 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF4P78317 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF4P78317 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF4P78317 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF4P78317 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF4P78317 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RNF4P78317 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
RNF4P78317 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF4P78317 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 256.6 ms