Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.88■□□□□ 0.77
YBX1P67809 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.88■□□□□ 0.77
YBX1P67809 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
YBX1P67809 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
YBX1P67809 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 AC093787.1-201ENST00000450396 207 ntBASIC19.87■□□□□ 0.77
YBX1P67809 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.87■□□□□ 0.77
YBX1P67809 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.87■□□□□ 0.77
YBX1P67809 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.87■□□□□ 0.77
YBX1P67809 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
YBX1P67809 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 AC011484.1-201ENST00000377652 1995 ntBASIC19.86■□□□□ 0.77
YBX1P67809 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 AC007952.6-201ENST00000573168 2673 ntBASIC19.86■□□□□ 0.77
YBX1P67809 AC003957.1-201ENST00000625108 2673 ntBASIC19.86■□□□□ 0.77
YBX1P67809 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.86■□□□□ 0.77
YBX1P67809 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.86■□□□□ 0.77
YBX1P67809 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.86■□□□□ 0.77
YBX1P67809 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.86■□□□□ 0.77
YBX1P67809 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
YBX1P67809 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
YBX1P67809 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
YBX1P67809 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
YBX1P67809 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.85■□□□□ 0.77
YBX1P67809 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.85■□□□□ 0.77
YBX1P67809 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
YBX1P67809 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
YBX1P67809 AC006970.2-201ENST00000450065 779 ntBASIC19.85■□□□□ 0.77
YBX1P67809 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.85■□□□□ 0.77
YBX1P67809 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
YBX1P67809 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.85■□□□□ 0.77
YBX1P67809 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.85■□□□□ 0.77
YBX1P67809 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
YBX1P67809 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
YBX1P67809 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.84■□□□□ 0.77
YBX1P67809 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.84■□□□□ 0.77
YBX1P67809 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
YBX1P67809 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.84■□□□□ 0.77
YBX1P67809 AC007322.3-201ENST00000426526 701 ntBASIC19.84■□□□□ 0.77
YBX1P67809 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
YBX1P67809 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.84■□□□□ 0.77
YBX1P67809 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
YBX1P67809 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
YBX1P67809 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.83■□□□□ 0.77
YBX1P67809 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.83■□□□□ 0.77
YBX1P67809 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
YBX1P67809 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms