Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LSM3P62310 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM3P62310 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
LSM3P62310 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.35■□□□□ 0.53
LSM3P62310 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LSM3P62310 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.35■□□□□ 0.53
LSM3P62310 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM3P62310 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.35■□□□□ 0.53
LSM3P62310 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.35■□□□□ 0.53
LSM3P62310 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LSM3P62310 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.35■□□□□ 0.53
LSM3P62310 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LSM3P62310 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.34■□□□□ 0.53
LSM3P62310 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.34■□□□□ 0.53
LSM3P62310 AC087239.1-201ENST00000622671 572 ntBASIC18.34■□□□□ 0.53
LSM3P62310 AC068587.7-201ENST00000641602 218 ntBASIC18.34■□□□□ 0.53
LSM3P62310 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LSM3P62310 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LSM3P62310 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM3P62310 AC090340.1-201ENST00000620778 4980 ntBASIC18.33■□□□□ 0.53
LSM3P62310 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.33■□□□□ 0.53
LSM3P62310 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM3P62310 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.33■□□□□ 0.53
LSM3P62310 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LSM3P62310 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM3P62310 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.33■□□□□ 0.52
LSM3P62310 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.33■□□□□ 0.52
LSM3P62310 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 AC005332.8-201ENST00000622750 2735 ntBASIC18.33■□□□□ 0.52
LSM3P62310 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
LSM3P62310 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.33■□□□□ 0.52
LSM3P62310 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LSM3P62310 FZD10-202ENST00000539839 3282 ntBASIC18.33■□□□□ 0.52
LSM3P62310 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM3P62310 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LSM3P62310 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.32■□□□□ 0.52
LSM3P62310 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LSM3P62310 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.32■□□□□ 0.52
LSM3P62310 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM3P62310 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 AC010141.3-201ENST00000456659 717 ntBASIC18.32■□□□□ 0.52
LSM3P62310 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LSM3P62310 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.32■□□□□ 0.52
LSM3P62310 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM3P62310 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM3P62310 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM3P62310 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 RARRES2P2-201ENST00000394842 485 ntBASIC18.31■□□□□ 0.52
LSM3P62310 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM3P62310 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM3P62310 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM3P62310 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM3P62310 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM3P62310 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.31■□□□□ 0.52
LSM3P62310 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM3P62310 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms