Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.78■■□□□ 1.08
VCPP55072 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.78■■□□□ 1.08
VCPP55072 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VCPP55072 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VCPP55072 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
VCPP55072 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.77■■□□□ 1.08
VCPP55072 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.77■■□□□ 1.08
VCPP55072 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.77■■□□□ 1.08
VCPP55072 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.77■■□□□ 1.08
VCPP55072 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.77■■□□□ 1.08
VCPP55072 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.77■■□□□ 1.08
VCPP55072 AC008175.2-201ENST00000612840 297 ntBASIC21.77■■□□□ 1.08
VCPP55072 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
VCPP55072 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VCPP55072 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VCPP55072 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.77■■□□□ 1.07
VCPP55072 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
VCPP55072 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
VCPP55072 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
VCPP55072 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.76■■□□□ 1.07
VCPP55072 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VCPP55072 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.76■■□□□ 1.07
VCPP55072 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.76■■□□□ 1.07
VCPP55072 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.76■■□□□ 1.07
VCPP55072 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.76■■□□□ 1.07
VCPP55072 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.76■■□□□ 1.07
VCPP55072 Z99916.2-201ENST00000604037 246 ntBASIC21.76■■□□□ 1.07
VCPP55072 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.76■■□□□ 1.07
VCPP55072 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VCPP55072 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.76■■□□□ 1.07
VCPP55072 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VCPP55072 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.75■■□□□ 1.07
VCPP55072 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
VCPP55072 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.75■■□□□ 1.07
VCPP55072 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
VCPP55072 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VCPP55072 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCPP55072 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VCPP55072 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VCPP55072 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.74■■□□□ 1.07
VCPP55072 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VCPP55072 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.74■■□□□ 1.07
VCPP55072 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.74■■□□□ 1.07
VCPP55072 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.74■■□□□ 1.07
VCPP55072 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VCPP55072 FAM197Y4-202ENST00000622692 608 ntBASIC21.74■■□□□ 1.07
VCPP55072 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VCPP55072 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VCPP55072 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.74■■□□□ 1.07
VCPP55072 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VCPP55072 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VCPP55072 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.74■■□□□ 1.07
VCPP55072 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.74■■□□□ 1.07
VCPP55072 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.73■■□□□ 1.07
VCPP55072 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.73■■□□□ 1.07
VCPP55072 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.73■■□□□ 1.07
VCPP55072 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.73■■□□□ 1.07
VCPP55072 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.73■■□□□ 1.07
VCPP55072 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
VCPP55072 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VCPP55072 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms