Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.47■□□□□ 0.87
CCNFP41002 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.47■□□□□ 0.87
CCNFP41002 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CCNFP41002 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCNFP41002 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CCNFP41002 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 AC092720.2-201ENST00000602388 1665 ntBASIC20.46■□□□□ 0.87
CCNFP41002 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.46■□□□□ 0.87
CCNFP41002 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.46■□□□□ 0.87
CCNFP41002 AL162430.1-201ENST00000480705 870 ntBASIC20.46■□□□□ 0.87
CCNFP41002 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.46■□□□□ 0.87
CCNFP41002 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 KRT18P61-201ENST00000585825 1298 ntBASIC20.46■□□□□ 0.87
CCNFP41002 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.46■□□□□ 0.87
CCNFP41002 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.46■□□□□ 0.87
CCNFP41002 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCNFP41002 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCNFP41002 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.46■□□□□ 0.87
CCNFP41002 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.45■□□□□ 0.86
CCNFP41002 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.45■□□□□ 0.86
CCNFP41002 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.45■□□□□ 0.86
CCNFP41002 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CCNFP41002 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCNFP41002 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.45■□□□□ 0.86
CCNFP41002 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.45■□□□□ 0.86
CCNFP41002 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.45■□□□□ 0.86
CCNFP41002 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCNFP41002 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.45■□□□□ 0.86
CCNFP41002 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.44■□□□□ 0.86
CCNFP41002 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.44■□□□□ 0.86
CCNFP41002 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.44■□□□□ 0.86
CCNFP41002 KRT16P2-201ENST00000414673 1423 ntBASIC20.44■□□□□ 0.86
CCNFP41002 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCNFP41002 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CCNFP41002 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCNFP41002 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CCNFP41002 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.43■□□□□ 0.86
CCNFP41002 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CCNFP41002 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.43■□□□□ 0.86
CCNFP41002 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.43■□□□□ 0.86
CCNFP41002 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCNFP41002 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.42■□□□□ 0.86
CCNFP41002 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.42■□□□□ 0.86
CCNFP41002 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.42■□□□□ 0.86
CCNFP41002 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.42■□□□□ 0.86
CCNFP41002 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.42■□□□□ 0.86
CCNFP41002 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCNFP41002 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms