Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC4P09017 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HOXC4P09017 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC4P09017 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC4P09017 PLK5-205ENST00000642079 1969 ntBASIC19.96■□□□□ 0.79
HOXC4P09017 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.96■□□□□ 0.79
HOXC4P09017 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC4P09017 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC4P09017 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.96■□□□□ 0.79
HOXC4P09017 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC4P09017 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC4P09017 AC120498.8-201ENST00000614275 531 ntBASIC19.96■□□□□ 0.79
HOXC4P09017 AC066615.1-201ENST00000640911 628 ntBASIC19.96■□□□□ 0.79
HOXC4P09017 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC4P09017 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC4P09017 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC4P09017 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC4P09017 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC4P09017 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC4P09017 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.95■□□□□ 0.78
HOXC4P09017 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HOXC4P09017 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC4P09017 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.95■□□□□ 0.78
HOXC4P09017 RN7SL471P-201ENST00000580476 299 ntBASIC19.95■□□□□ 0.78
HOXC4P09017 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HOXC4P09017 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
HOXC4P09017 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC4P09017 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC4P09017 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.94■□□□□ 0.78
HOXC4P09017 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC4P09017 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC4P09017 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.94■□□□□ 0.78
HOXC4P09017 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC4P09017 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC4P09017 AC142381.4-202ENST00000563973 229 ntBASIC19.94■□□□□ 0.78
HOXC4P09017 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.94■□□□□ 0.78
HOXC4P09017 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 AC026310.3-201ENST00000625186 2373 ntBASIC19.94■□□□□ 0.78
HOXC4P09017 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC4P09017 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC4P09017 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC4P09017 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HOXC4P09017 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.93■□□□□ 0.78
HOXC4P09017 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HOXC4P09017 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
HOXC4P09017 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 AC069544.1-201ENST00000609399 999 ntBASIC19.93■□□□□ 0.78
HOXC4P09017 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC4P09017 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC4P09017 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC4P09017 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.92■□□□□ 0.78
HOXC4P09017 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
HOXC4P09017 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC4P09017 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC4P09017 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC4P09017 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HOXC4P09017 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC4P09017 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC4P09017 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.92■□□□□ 0.78
HOXC4P09017 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC4P09017 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms