Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.9■□□□□ 0.78
SIX3O95343 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SIX3O95343 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SIX3O95343 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SIX3O95343 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX3O95343 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SIX3O95343 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SIX3O95343 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
SIX3O95343 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SIX3O95343 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX3O95343 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX3O95343 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SIX3O95343 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SIX3O95343 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.89■□□□□ 0.77
SIX3O95343 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX3O95343 AC007322.3-201ENST00000426526 701 ntBASIC19.89■□□□□ 0.77
SIX3O95343 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SIX3O95343 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.89■□□□□ 0.77
SIX3O95343 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX3O95343 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SIX3O95343 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SIX3O95343 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.89■□□□□ 0.77
SIX3O95343 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SIX3O95343 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.89■□□□□ 0.77
SIX3O95343 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX3O95343 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX3O95343 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SIX3O95343 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SIX3O95343 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX3O95343 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SIX3O95343 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.88■□□□□ 0.77
SIX3O95343 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SIX3O95343 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.88■□□□□ 0.77
SIX3O95343 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SIX3O95343 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX3O95343 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX3O95343 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.87■□□□□ 0.77
SIX3O95343 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX3O95343 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX3O95343 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.87■□□□□ 0.77
SIX3O95343 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SIX3O95343 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.87■□□□□ 0.77
SIX3O95343 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SIX3O95343 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SIX3O95343 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SIX3O95343 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
SIX3O95343 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SIX3O95343 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.86■□□□□ 0.77
SIX3O95343 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.86■□□□□ 0.77
SIX3O95343 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.86■□□□□ 0.77
SIX3O95343 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.86■□□□□ 0.77
SIX3O95343 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.86■□□□□ 0.77
SIX3O95343 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SIX3O95343 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.85■□□□□ 0.77
SIX3O95343 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SIX3O95343 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.85■□□□□ 0.77
SIX3O95343 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SIX3O95343 MYCNOS-205ENST00000641950 531 ntBASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms