Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.44■□□□□ 0.86
SHOX2O60902 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SHOX2O60902 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHOX2O60902 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.44■□□□□ 0.86
SHOX2O60902 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SHOX2O60902 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.43■□□□□ 0.86
SHOX2O60902 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.43■□□□□ 0.86
SHOX2O60902 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
SHOX2O60902 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.43■□□□□ 0.86
SHOX2O60902 AL032819.2-201ENST00000624543 2162 ntBASIC20.43■□□□□ 0.86
SHOX2O60902 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.43■□□□□ 0.86
SHOX2O60902 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHOX2O60902 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.42■□□□□ 0.86
SHOX2O60902 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.42■□□□□ 0.86
SHOX2O60902 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.42■□□□□ 0.86
SHOX2O60902 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SHOX2O60902 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.42■□□□□ 0.86
SHOX2O60902 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 AL691432.2-201ENST00000607222 2038 ntBASIC20.42■□□□□ 0.86
SHOX2O60902 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SHOX2O60902 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHOX2O60902 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.42■□□□□ 0.86
SHOX2O60902 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SHOX2O60902 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.41■□□□□ 0.86
SHOX2O60902 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.41■□□□□ 0.86
SHOX2O60902 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.41■□□□□ 0.86
SHOX2O60902 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.41■□□□□ 0.86
SHOX2O60902 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.41■□□□□ 0.86
SHOX2O60902 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.41■□□□□ 0.86
SHOX2O60902 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.41■□□□□ 0.86
SHOX2O60902 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 LINC01465-201ENST00000408887 1940 ntBASIC20.41■□□□□ 0.86
SHOX2O60902 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.41■□□□□ 0.86
SHOX2O60902 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHOX2O60902 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
SHOX2O60902 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHOX2O60902 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.4■□□□□ 0.86
SHOX2O60902 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHOX2O60902 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SHOX2O60902 PCDHB18P-201ENST00000524813 2368 ntBASIC20.4■□□□□ 0.86
SHOX2O60902 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SHOX2O60902 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SHOX2O60902 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.4■□□□□ 0.86
SHOX2O60902 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.4■□□□□ 0.86
SHOX2O60902 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.4■□□□□ 0.86
SHOX2O60902 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHOX2O60902 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHOX2O60902 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHOX2O60902 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SHOX2O60902 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.4■□□□□ 0.86
SHOX2O60902 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHOX2O60902 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHOX2O60902 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHOX2O60902 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHOX2O60902 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.39■□□□□ 0.86
SHOX2O60902 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
SHOX2O60902 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SHOX2O60902 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.39■□□□□ 0.86
SHOX2O60902 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SHOX2O60902 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
SHOX2O60902 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHOX2O60902 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHOX2O60902 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHOX2O60902 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.39■□□□□ 0.85
SHOX2O60902 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
SHOX2O60902 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms