Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM49D1C9J1S8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
TRIM49D1C9J1S8 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 RNF165-205ENST00000588679 2904 ntBASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.37■□□□□ 0.85
TRIM49D1C9J1S8 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 AC116050.2-201ENST00000612102 1779 ntBASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 AC120498.10-201ENST00000621827 505 ntBASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 AL358852.1-201ENST00000623174 1268 ntBASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM49D1C9J1S8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 AC125437.2-201ENST00000625180 2167 ntBASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM49D1C9J1S8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TRIM49D1C9J1S8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms