Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 AC092171.4-201ENST00000609130 632 ntBASIC14.46□□□□□ -0.09
LINC01549A6NIU2 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
LINC01549A6NIU2 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
LINC01549A6NIU2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC01549A6NIU2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC14.46□□□□□ -0.1
LINC01549A6NIU2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.46□□□□□ -0.1
LINC01549A6NIU2 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC01549A6NIU2 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
LINC01549A6NIU2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 TSPY13P-201ENST00000338964 914 ntBASIC14.45□□□□□ -0.1
LINC01549A6NIU2 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 KRT125P-201ENST00000546827 989 ntBASIC14.45□□□□□ -0.1
LINC01549A6NIU2 AC098818.2-201ENST00000564925 2320 ntBASIC14.45□□□□□ -0.1
LINC01549A6NIU2 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LINC01549A6NIU2 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 AC112907.3-201ENST00000577781 2400 ntBASIC14.44□□□□□ -0.1
LINC01549A6NIU2 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 AC004987.1-201ENST00000428627 508 ntBASIC14.44□□□□□ -0.1
LINC01549A6NIU2 AP005435.1-201ENST00000529293 1178 ntBASIC14.44□□□□□ -0.1
LINC01549A6NIU2 ABHD17AP5-201ENST00000580133 923 ntBASIC14.44□□□□□ -0.1
LINC01549A6NIU2 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC14.44□□□□□ -0.1
LINC01549A6NIU2 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.43□□□□□ -0.1
LINC01549A6NIU2 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms