Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 FGF8-207ENST00000618991 856 ntTSL 3 BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 LINC01006-201ENST00000333319 2292 ntBASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 BID-203ENST00000399765 1879 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV4A0A0B4J268 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 AC027702.1-201ENST00000563810 1770 ntBASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 AC019069.1-201ENST00000610008 1333 ntBASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV4A0A0B4J268 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 AC097381.1-201ENST00000429019 1296 ntBASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 RBM17P2-201ENST00000616397 1405 ntBASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV4A0A0B4J268 AC073314.1-201ENST00000568729 2216 ntBASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 AC007322.3-201ENST00000426526 701 ntBASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 CD44-222ENST00000526025 1052 ntTSL 2 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
TRAV4A0A0B4J268 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms