Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AL162412.1-201ENST00000567129 965 ntBASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 OR10C1-204ENST00000622521 1039 ntBASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AC008694.1-202ENST00000636953 945 ntBASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AC061975.6-201ENST00000579045 1553 ntBASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHB3Q9Y5E6 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 AC069236.1-201ENST00000604339 616 ntBASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHB3Q9Y5E6 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 GABARAPL3-202ENST00000624044 1851 ntBASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHB3Q9Y5E6 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDHB3Q9Y5E6 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 AL512625.2-201ENST00000417533 625 ntBASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 AL591742.1-201ENST00000604433 565 ntBASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDHB3Q9Y5E6 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms