Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
IFT140Q96RY7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
IFT140Q96RY7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
IFT140Q96RY7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
IFT140Q96RY7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
IFT140Q96RY7 NMU-205ENST00000511469 756 ntTSL 3 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
IFT140Q96RY7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
IFT140Q96RY7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC34.31■■■■□ 3.08
IFT140Q96RY7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
IFT140Q96RY7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
IFT140Q96RY7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC34.3■■■■□ 3.08
IFT140Q96RY7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC34.3■■■■□ 3.08
IFT140Q96RY7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC34.29■■■■□ 3.08
IFT140Q96RY7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC34.29■■■■□ 3.08
IFT140Q96RY7 UPK3BP1-201ENST00000428678 509 ntBASIC34.29■■■■□ 3.08
IFT140Q96RY7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC34.29■■■■□ 3.08
IFT140Q96RY7 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC34.29■■■■□ 3.08
IFT140Q96RY7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
IFT140Q96RY7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 AC093323.1-202ENST00000635031 2045 ntBASIC34.28■■■■□ 3.08
IFT140Q96RY7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 F2R-202ENST00000505600 442 ntTSL 2 BASIC34.28■■■■□ 3.08
IFT140Q96RY7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC34.28■■■■□ 3.08
IFT140Q96RY7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC34.28■■■■□ 3.08
IFT140Q96RY7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC34.28■■■■□ 3.08
IFT140Q96RY7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC34.28■■■■□ 3.08
IFT140Q96RY7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC34.28■■■■□ 3.08
IFT140Q96RY7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC34.27■■■■□ 3.08
IFT140Q96RY7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC34.27■■■■□ 3.08
IFT140Q96RY7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC34.26■■■■□ 3.08
IFT140Q96RY7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
IFT140Q96RY7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
IFT140Q96RY7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
IFT140Q96RY7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC34.26■■■■□ 3.07
IFT140Q96RY7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC34.26■■■■□ 3.07
IFT140Q96RY7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC34.26■■■■□ 3.07
IFT140Q96RY7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC34.25■■■■□ 3.07
IFT140Q96RY7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
IFT140Q96RY7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC34.25■■■■□ 3.07
IFT140Q96RY7 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC34.25■■■■□ 3.07
IFT140Q96RY7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC34.25■■■■□ 3.07
IFT140Q96RY7 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC34.25■■■■□ 3.07
IFT140Q96RY7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC34.25■■■■□ 3.07
IFT140Q96RY7 MYC-208ENST00000641036 567 ntBASIC34.25■■■■□ 3.07
IFT140Q96RY7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
IFT140Q96RY7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 AC022616.7-201ENST00000525383 220 ntBASIC34.24■■■■□ 3.07
IFT140Q96RY7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC34.24■■■■□ 3.07
IFT140Q96RY7 AC010542.4-201ENST00000563151 1910 ntBASIC34.24■■■■□ 3.07
IFT140Q96RY7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC34.23■■■■□ 3.07
IFT140Q96RY7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC34.23■■■■□ 3.07
IFT140Q96RY7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC34.23■■■■□ 3.07
IFT140Q96RY7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
IFT140Q96RY7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
IFT140Q96RY7 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
IFT140Q96RY7 ISCU-203ENST00000431221 799 ntTSL 2 BASIC34.23■■■■□ 3.07
IFT140Q96RY7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC34.23■■■■□ 3.07
IFT140Q96RY7 AP002982.1-201ENST00000492365 877 ntBASIC34.23■■■■□ 3.07
IFT140Q96RY7 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC34.23■■■■□ 3.07
IFT140Q96RY7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms